loadScript /static/js/j2s/core/package.js
loadScript /static/js/j2s/core/corejmol.z.js
loadScript /static/js/j2s/core/corescript.z.js
JSmol exec jmolApplet3 start applet null
Jmol JavaScript applet jmolApplet3__564594243949275__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript null
AppletRegistry.checkIn(jmolApplet3__564594243949275__)
vwrOptions:
{ "name":"jmolApplet3","applet":true,"documentBase":"https://knotprot.cent.uw.edu.pl/view/5arl/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet3__564594243949275__","codePath":"https:/static/js/j2s/","display":"jmolApplet3_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"564594243949275","bgcolor":"white" }
setting document base to "https://knotprot.cent.uw.edu.pl/view/5arl/A/"
(C) 2015 Jmol Development
Jmol Version: 14.29.13 2018-04-17 17:17
java.vendor: Java2Script (HTML5)
java.version: 2018-01-28 23:38:52 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet3 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor white
backgroundColor = "white"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet3__564594243949275__ ready
script 1 started
platformSpeed = 8
Viewer cachePut cache://localLOAD_/static/knot_data/5arl/A/5arl_A_cysteine_knot.pdb.gz
Viewer cachePut https://knotprot.cent.uw.edu.pl/static/knot_data/5arl/A/5arl_A_cysteine_knot.pdb.gz
FileManager.getAtomSetCollectionFromFile(/static/knot_data/5arl/A/5arl_A_cysteine_knot.pdb.gz)
The Resolver thinks Pdb
loadScript /static/js/j2s/core/corebio.z.js
Time for openFile(/static/knot_data/5arl/A/5arl_A_cysteine_knot.pdb.gz): 289 ms
reading 121 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
121 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Time for creating model: 18 ms
Adding embedded #jmolscript: select ({0:120});backbone only;select *;
platformSpeed = 7
cartoonsFancy = true
sheetSmoothing = 1.0
traceAlpha = true
loadScript /static/js/j2s/core/corescriptcmd.z.js
specularPower = 9
ambientPercent = 20
antialiasDisplay = true
Script completed
Jmol script terminated
loadScript /static/js/j2s/J/g3d/HermiteRenderer.js
loadScript /static/js/j2s/J/renderbio/BioMeshRenderer.js
loadScript /static/js/j2s/J/render/MeshRenderer.js
loadScript /static/js/j2s/J/shape/Mesh.js
