5DA0A

Structure of the the slc26 transporter slc26dg in complex with a nanobody
Slipknot S +31 +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 86-225 140 226-471 1-28 29-85 28 245 slipknot
Chain Sequence
QREWFANPRKDVLAGIVVALALIPEAIAFSIIAGVDPQVGLYASFIIALITAFLGGRPGMISAATGAMALLMTGLVKDHGIQYLFAATVLTGVLQVVFGWAKLARYLKFVPRSVMVGFVNALAILIFMAQLPQFVGANWQMYAMVAAGLAIIYLLPLVFKAMPSALVAIVVLTVVAVVTGADVKTVGDMGTLPTALPHFQFPQVPLTFETLAIIFPVALTLSLVGLLESLLTAQLIDERTDTTSDKNVESRGQGVANIVTGFFGGMAGCAMIGQSMINVTSGGRGRLSTFVAGAFLMVLILALQPLLVQIPMAALVAVMMVVAISTFDWGSLR----FPKGETVVMLATVAVTVFTHDLSLGVLIGVVLSALFFARKVSQLSQVTPVDEVDGTRTYRVRGQLFFVSTHDFLHQFDFTHPARRVVIDLSDAHFWDGSAVGALDKVMLKFMRQGTSVELRGLNAASATLVERL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 45-353 309 354-467 1-22 23-44 22 113 slipknot
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2.1 45-277 233 1-23, 312-467 24-44, 278-311 23 156 slipknot
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2.1 44-230 187 1-24, 246-467 25-43, 231-245 24 222 slipknot
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2.1 44-245 202 1-24, 249-467 25-43, 246-248 24 219 slipknot
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1.1 44-219 176 1-25, 231-467 26-43, 220-230 25 237 slipknot
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1.1 45-220 176 1-43, 234-467 44-44, 221-233 43 234 slipknot
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1.1 78-217 140 1-62, 231-467 63-77, 218-230 62 237 slipknot
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2.1 91-355 265 356-467 1-62 63-90 62 111 slipknot
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2.1 75-230 156 1-63, 249-467 64-74, 231-248 63 219 slipknot
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2.1 90-292 203 1-63, 345-467 64-89, 293-344 63 123 slipknot
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2.1 76-230 155 1-74, 246-467 75-75, 231-245 74 222 slipknot
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2.1 89-271 183 1-77, 293-467 78-88, 272-292 77 175 slipknot
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1.1 89-219 131 1-78, 231-467 79-88, 220-230 78 237 slipknot
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1.1 89-230 142 1-79, 232-467 80-88, 231-231 79 236 slipknot
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2.1 89-232 144 1-79, 250-467 80-88, 233-249 79 218 slipknot
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1.1 88-258 171 1-79, 270-467 80-87, 259-269 79 198 slipknot
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2.1 90-238 149 1-88, 248-467 89-89, 239-247 88 220 slipknot
missing residues 334-337
publication title Structure of a prokaryotic fumarate transporter reveals the architecture of the SLC26 family.
pubmed doi rcsb
structure length 467
molecule tags Transport protein
source organism Deinococcus geothermalis (strain dsm 11300)
sequence length 471
total genus Genus: 151
molecule keywords Sulphate transporter
ec nomenclature
pdb deposition date 2015-08-19
KnotProt deposition date 2015-10-25
Image from the rcsb pdb (www.rcsb.org)
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