5EI0A

Structure of rcl-cleaved vaspin (serpina12)
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S -31 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 233-339 107 340-373 1-35 36-232 35 33 slipknot
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41 218-353 136 1-217 365-373 354-364 217 9 slipknot
Chain Sequence
KQRMAAKELARQNMDLGFKLLKKLAFYNPGRNIFLSPLSISTAFSMLCLGAQDSTLDEIKQGFNFRKMPEKDLHEGFHYIIHELTQKTQDLKLSIGNTLFIDQRLQPQRKFLEDAKNFYSAETILTNFQNLEMAQKQINDFISQKTHGKINNLIENIDPGTVMLLANYIFFRARWKHEFDPNVTKEEDFFLEKNSSVKVPMMFRSGIYQVGYDDKLSCTILEIPYQKNITAIFILPDEGKLKHLEKGLQVDTFSRWKTLLSRRVVDVSVPRLHMTGTFDLKKTLSYIGVSKIFEEHGDLTKIAPHRSLKVGEAVHKAELKMDERGTEGAAGTGAQTLP-ETPLVVKIDKPYLLLIYSEKIPSVLFLGKIVNPI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 208-339 132 1-36, 353-373 37-207, 340-352 36 21 slipknot
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3.1m 171-366 196 367-373 1-36 37-170 36 6 slipknot
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3.1m 206-367 162 368-373 1-178 179-205 178 5 slipknot
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2.1m 209-339 131 1-207, 352-373 208-208, 340-351 207 22 slipknot
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2.1m 212-339 128 1-208, 352-373 209-211, 340-351 208 22 slipknot
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3.2m 222-353 132 1-207, 366-373 208-221, 354-365 207 8 slipknot
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2.1m 226-366 141 367-373 1-217 218-225 217 6 slipknot
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3.1m 232-339 108 1-223, 353-373 224-231, 340-352 223 21 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling