5G2VA

Structure of bt4656 in complex with its substrate d-glucosamine-2-n, 6-o-disulfate.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 5-327 323 1-4 344-494 328-343 4 151 slipknot
Chain Sequence
KRPNIIFMMTDDHTTQAMSCYGGNLIQTPNMDRIANEGIRFDNCYAVNALSGPSRACILTGKFSHENGFTDNASTFNGDQQTFPKLLQQAGYQTAMIGKWHLISEPQGFDHWSILSGQHEQGDYYDPDFWEDGKHIVEKGYATDIITDKAINFLENRDKNKPFCMMYHQKAPHRNWMPAPRHLGIFNNTIFPEPANLFDDYEGRGKAAREQDMSIEHTLTNDWDLKLLTREEMLKDTTNRLYSVYKRMPSEVQDKWDSAYAQRIAEYRKGDLKGKALISWKYQQYMRDYLATVLAVDENIGRLLNYLEKIGELDNTIIVYTSDQGFFLGEHGWFDKRFMYEECQRMPLIIRYPKAIKAGSTSSAISMNVDFAPTFLDFAGVEVPSDIQGASLKPVLENEGKTPADWRKAAYYHYYEYPAEHSVKRHYGIRTQDFKLIHFYNDIDEWEMYDMKADPREMNNIFGKAEYAKKQKELMQLLEETQKQYKDNDPDEKE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 4-333 330 1-3 345-494 334-344 3 150 slipknot
view details
2.1 4-344 341 1-3 349-494 345-348 3 146 slipknot
publication title Metabolism of Host Gags by the Human Gut Bacterium Bacteroides Thetaiotaomicron
rcsb
structure length 494
molecule tags Hydrolase
source organism Bacteroides thetaiotaomicron
sequence length 494
total genus Genus: 204
molecule keywords N-ACETYLGLUCOSAMINE-6-SULFATASE
ec nomenclature
pdb deposition date 2016-04-14
KnotProt deposition date 2018-09-12
Image from the rcsb pdb (www.rcsb.org)
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