5GMKQ

Cryo-em structure of the catalytic step i spliceosome (c complex) at 3.4 angstrom resolution
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 25
Knot K -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 125-248 124 1-124, 249-294 124 46 knot
Chain Sequence
DEINEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSNNIIKTLICVRCATQRNICQCCMLDSRWHIPIQLRDHLISLVNEENVMTEEAKNDMMKRFLSLKNVKLGGAQIT---------------------------------------------------------------------------TKSFFLYNIDASIPEWKITDTVSQLLSLIVNHKAKCGGLRFQSSELGERFVSIFIIPWSSG
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 125-165 41 1-124, 166-185 124 20 knot
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2.1m 125-159 35 1-124 166-185 160-165 124 20 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling