5HJ3C

Crystal structure of host-primed ebola virus gp, gpcl.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 78-141 64 1-77 146-159 142-145 77 14 slipknot
Chain Sequence
RSIPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 79-139 61 1-78 148-159 140-147 78 12 slipknot
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1.1 84-140 57 1-78, 147-159 79-83, 141-146 78 13 slipknot
publication title Host-Primed Ebola Virus GP Exposes a Hydrophobic NPC1 Receptor-Binding Pocket, Revealing a Target for Broadly Neutralizing Antibodies.
pubmed doi rcsb
structure length 159
molecule tags Viral protein/immune system
source organism Ebola virus sp.
sequence length 159
total genus Genus: 33
molecule keywords Envelope glycoprotein
ec nomenclature
pdb deposition date 2016-01-12
KnotProt deposition date 2016-03-15
Image from the rcsb pdb (www.rcsb.org)
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