| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 15-249 | 235 | 1-14, 250-488 | 14 | 239 | knot |
Chain Sequence |
LDSCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGAASNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAAAWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSELHGSWLIWFRPEVIKTVRWGGDPHKTVQESGRIHPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKTEE
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 14-286 | 273 | 1-13, 287-488 | 13 | 202 | knot | ||||
| view details |
 |
3.2m | 14-245 | 232 | 1-13 | 253-488 | 246-252 | 13 | 236 | slipknot | ||
| view details |
|
3.2m | 14-255 | 242 | 1-13 | 266-488 | 256-265 | 13 | 223 | slipknot | ||
| view details |
|
3.2m | 13-267 | 255 | 1-12 | 287-488 | 268-286 | 12 | 202 | slipknot | ||
| view details |
 |
3.2 | 17-460 | 444 | 461-488 | 1-13 | 14-16 | 13 | 27 | slipknot |
| sequence length |
488
|
| structure length |
488
|
| publication title |
Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome protein
|
| source organism |
Agrobacterium fabrum
|
| total genus |
 Genus: 153
|
| ec nomenclature | |
| pdb deposition date | 2016-01-26 |
| KnotProt deposition date | 2016-08-03 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
