| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
41 | 13-245 | 233 | 1-12, 246-484 | 12 | 239 | knot |
Chain Sequence |
SCGAEPIHIPGAIQEHGALLVLSAREFSVVQASDNLANYIGVDLPIGAVATEANLPFISVLSAWYSGEESNFRYAWAEKKLDVSAHRSGTLVILEVEKAGVGESAEKLMGELTSLAKYLNSAPSLEDALFRTAQLVSSISGHDRTLIYDFGLDWSGHVVAEAGSGALPSYLGLRFPAGDIPPQARQLYTINRLRMIPDVDYKPVPIRPEVNAETGAVLDMSFSQLRSVSPVHLEYMRNMGTAASMSVSIVVNGALWGLIACHHATPHSVSLAVREACDFAAQLLSMRIAMEQSSQDASRRVELGHIQARLLKGMAAAEKWVDGLLGGEGEREDLLKQVGADGAALVLGDDYELVGNTPSREQVEELILWLGEREIADVFATDNLAGNYPTAAAYASVASGIIAMRVSE--GSWLIWFRPEVIKTVRWGGDPHKTVQERI--HPRKSFEIWKEQLRNTSFPWSEPELAAARELRGAIIGIVLRKT
|
Knotoid cutoff: 0.5
Knotoid matrix content: 1
| Knot core range | Knot core length | Knot tails range | Slipknot tails range | Slipknot loops range | N-end length | C-end length | Type | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
4.1 | 12-286 | 275 | 1-11, 287-480 | 11 | 194 | knot | ||||
| view details |
 |
3.2m | 11-242 | 232 | 1-10 | 250-480 | 243-249 | 10 | 231 | slipknot | ||
| view details |
|
3.2m | 11-255 | 245 | 1-10 | 265-480 | 256-264 | 10 | 216 | slipknot | ||
| view details |
|
3.2m | 11-267 | 257 | 1-10 | 285-480 | 268-284 | 10 | 196 | slipknot | ||
| view details |
|
4.1 | 14-283 | 270 | 1-7, 393-480 | 8-13, 284-392 | 7 | 88 | slipknot | |||
| view details |
|
4.1 | 15-285 | 271 | 1-11, 426-480 | 12-14, 286-425 | 11 | 55 | slipknot | |||
| view details |
|
 |
3.2 | 15-425 | 411 | 1-11, 437-480 | 12-14, 426-436 | 11 | 44 | slipknot | ||
| view details |
|
|
4.1 | 15-441 | 427 | 442-480 | 1-11 | 12-14 | 11 | 38 | slipknot |
| sequence length |
484
|
| structure length |
480
|
| publication title |
Structure of the photosensory module (PAS-GAF-PHY) of the bacterial phytochrome Agp1 (AtBphP1) in the Pr form at 1.85 Angstroms resolution
rcsb |
| molecule tags |
Signaling protein
|
| molecule keywords |
Bacteriophytochrome protein
|
| source organism |
Agrobacterium fabrum str. c58
|
| missing residues |
409-410, 438-439
|
| total genus |
 Genus: 137
|
| ec nomenclature | |
| pdb deposition date | 2016-02-15 |
| KnotProt deposition date | 2016-08-03 |
Image from the rcsb pdb (www.rcsb.org)
#similar chains in the KnotProt database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
