5IKJA

Structure of clr2 bound to the clr1 c-terminus
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 123
Knot K 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 74-355 282 1-73, 356-535 73 180 knot
Chain Sequence
MPAITCVWSDGRSDTWP-----------PSLKPLPHQDSKNLLYRQICGRLLAQHVFGGAGSTQPILNQLCKRQIYLTDSFENY-----------------------------------------------YLASLPTNYQLYQRDSGNGKREFWLYGHPSGRPFRSVNDFLHHLYWLISDLTRNESTCCCVLCSGNMTRVRKNL----QKENERMFHECKDDTYTWPSSYRLGEVVWIDINNELIPAIIVARNLINYVKLISDTFVEPYQYHCKQLGNSRYYFDMAAADIEPWSRHPLDLQKQEHLVAHSICQTWNLFG-------IFQPLEGIDMEEPKFHDENYSIPLTVLPTFGGESSLDDHFYGIFRGAEKLWINDLCVISTSSLPSVLQKTSFMYISDIYVNEDDIVCFQGSLWTQIDKNLKEL-PRRLQMVSKLSNTYFRCLHDKSVEYVCPFADVLGRWYEPWFVKGDLNYTSEVKERTSSRLSAVGSE-----------------NWVDDDFYEYLLSEIDMVSAV
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 34-393 360 1-33, 394-448 33 55 knot
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5.5m 35-298 264 1-34 314-448 299-313 34 135 slipknot
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4.1 37-310 274 1-36 393-448 311-392 36 56 slipknot
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4.1 37-392 356 1-36 394-448 393-393 36 55 slipknot
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4.1 41-400 360 1-33, 428-448 34-40, 401-427 33 21 slipknot
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3.2 52-400 349 1-40, 428-448 41-51, 401-427 40 21 slipknot
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3.2 52-427 376 1-33, 431-448 34-51, 428-430 33 18 slipknot
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3.2 52-430 379 1-33, 447-448 34-51, 431-446 33 2 slipknot
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4.1 49-312 264 1-36, 352-448 37-48, 313-351 36 97 slipknot
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3.2 49-357 309 1-36, 386-448 37-48, 358-385 36 63 slipknot
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3.2 49-385 337 1-33, 397-448 34-48, 386-396 33 52 slipknot
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3.2 49-396 348 1-33, 399-448 34-48, 397-398 33 50 slipknot
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3.2 45-398 354 1-33, 401-448 34-44, 399-400 33 48 slipknot
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3.2 50-312 263 1-48, 352-448 49-49, 313-351 48 97 slipknot
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4.1 52-357 306 1-48, 386-448 49-51, 358-385 48 63 slipknot
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3.2 52-385 334 1-48, 397-448 49-51, 386-396 48 52 slipknot
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4.1 52-396 345 1-48, 399-448 49-51, 397-398 48 50 slipknot
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3.2 49-398 350 1-44, 401-448 45-48, 399-400 44 48 slipknot
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4.1 52-312 261 1-49, 352-448 50-51, 313-351 49 97 slipknot
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3.2 50-351 302 1-36, 358-448 37-49, 352-357 36 91 slipknot
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4.1 63-396 334 1-48, 419-448 49-62, 397-418 48 30 slipknot
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4.1 63-418 356 1-51, 433-448 52-62, 419-432 51 16 slipknot
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5.5m 63-298 236 1-48, 312-448 49-62, 299-311 48 137 slipknot
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4.1 63-335 273 1-49, 366-448 50-62, 336-365 49 83 slipknot
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4.1 63-433 371 434-448 1-48 49-62 48 14 slipknot
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4.1 63-313 251 1-51, 332-448 52-62, 314-331 51 117 slipknot
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4.1 63-331 269 1-51, 333-448 52-62, 332-332 51 116 slipknot
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4.1 63-333 271 1-51, 336-448 52-62, 334-335 51 113 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling