5IW7A

Crystal structure of yeast tsr1, a pre-40s ribosome synthesis factor
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 124
Slipknot S 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 221-636 416 1-220 707-721 637-706 220 15 slipknot
Chain Sequence
LDSIENRKLFEGKNGAAKIITIVPLVNDLDPLDILYKLLKCADDEGIMVQE--SKRIFNVHIKKFKSNLKIIIPDMTNFLNILDCAKVADFVVFGLSGVQEVDEEFGEQIIRALELQGIASYIGVISNLSAVHEKEKFQLDVKQSLESYFKHFFPSEERVYNLEKNSDALNVLRTLCQRLPRSINWRDNRGYVVADFVDFVETSPDSGDLVIEGTVRGIGFNANRLVHIPDFGDFQLNKIEKISESTV----------------------FESNMNRDTLDEYAPEGTEDWSDYDEDFELTTARYDDHGFLDREFPDEIELEP---SESAIERLKRYRGLK-------------------------------------NLYNCDWQVDEKDPSSPAEWKRLLRIGNYKNTKNRIIKETKNEAQAIAGDRIRMFIRFPKFLLEKIQDPKQLLFAVYGLLLHEHKNAVVNFSLQRWEQYDKPVPSQEPIVVQYGVRRYTIQPLFSQGSNSPNNVHKYERFLHPDTVSVATCIAPVDFTQSPAIFFKPSPTDAKNIELIGHGTFLNADHSRILAKRAILTGHPFRFHKTVVTVRYMFFRPEDVEWFKSIPLFTKSGRSGFIKESLGTHGYFKATFDGLSAQDVVAMSLYKRMWPMPSLPWNG
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 190-456 267 1-189 465-660 457-464 189 196 slipknot
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4.1 191-575 385 1-190 645-660 576-644 190 16 slipknot
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2.1m 212-456 245 1-193, 465-660 194-211, 457-464 193 196 slipknot
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4.1 216-575 360 1-193, 645-660 194-215, 576-644 193 16 slipknot
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4.1 220-576 357 1-216, 644-660 217-219, 577-643 216 17 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling