5JDHA

Structural mechanisms of extracellular ion exchange and induced binding-site occlusion in the sodium-calcium exchanger ncx_mj soaked with 10 mm na+ and 10mm ca2+
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 123
Knot K +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 42-233 192 1-41, 234-301 41 68 knot
Chain Sequence
MVILGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKNGSAEIE----KNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHLPAENVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRM
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 95x +31

  Help Knotting data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 44-227 184 1-43, 228-294 43 67 knot
Fingerprint Knot forming loop Loop type
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Thr50 <->
Bridging ionCa404
<-> Asp240 ... Ser236 <->
Bridging ionNa402
<-> Glu213 ... Asp127 <->
Bridging ionCa403
<-> Gly122 ... Thr50		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Ser236 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Glu213 <->
Bridging ionNa402
<-> Ser236 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Thr50 <->
Bridging ionCa404
<-> Asp240 ... Asp127 <->
Bridging ionCa403
<-> Asp121 ... Thr50		 ion-based
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser236 ... Asp127 <->
Bridging ionCa403
<-> Asp121 ... Thr50 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ser51 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ser236 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Ser236 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Ser236 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Glu213 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Ser236 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Ser236 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Met1 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ... Ser236 <->
Bridging ionNa402
<-> Ser51		 ion-based
K +31 Met1 ... Thr50 <->
Bridging ionNa402
<-> Ser236 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Ser51 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ... Ser236 <->
Bridging ionNa402
<-> Ser51		 ion-based
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Glu213 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Thr209 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Glu213 ... Asp127 <->
Bridging ionCa403
<-> Asp121 ... Thr50 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31
Chain closureMet1 <-> Met301
... Glu54 <->
Bridging ionCa404
<-> Thr50 ... Ser51 <->
Bridging ionNa402
<-> Ala47 ... Met1		 probabilistic
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Ser236 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Asp127 ... Ser236 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ser236 <->
Bridging ionNa402
<-> Thr50		 ion-based
K +31 Met1 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Met1 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Thr50 <->
Bridging ionCa404
<-> Glu54 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionNa402
<-> Ser51 ... Thr50		 ion-based
K +31 Met1 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Gly122 ... Glu213 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Ala47 ... Thr50 <->
Bridging ionCa404
<-> Glu54 ... Ile118 <->
Bridging ionCa403
<-> Asp121 ... Glu213 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser51 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ser51 <->
Bridging ionNa402
<-> Ser236 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Ser236 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Met1 ... Ala47 <->
Bridging ionNa402
<-> Thr50 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Thr50 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ... Ser236 <->
Bridging ionNa402
<-> Thr50		 ion-based
K +31 Met1 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
K +31 Ala47 ... Gly122 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ... Ser236 <->
Bridging ionNa402
<-> Ala47		 ion-based
K +31 Met1 ... Asp121 <->
Bridging ionCa403
<-> Asp127 ... Glu213 <->
Bridging ionCa404
<-> Asp240 ...
Chain closureMet301 <-> Met1
 probabilistic
Chain Sequence
MVILGVGYFLLGLILLYYGSDWFVLGSERIARHFNVSNFVIGATVMAIGTSLPEILTSAYASYMHAPGISIGNAIGSCICNIGLVLGLSAIISPIIVDKNLQKNILVYLLFVIFAAVIGIDGFSWIDGVVLLILFIIYLRWTVKNGSAEIE----KNNPSVVFSLVLLIIGLIGVLVGAELFVDGAKKIALALDISDKVIGFTLVAFGTSLPELMVSLAAAKRNLGGMVLGNVIGSNIADIGGALAVGSLFMHLPAENVQMAVLVIMSLLLYLFAKYSKIGRWQGILFLALYIIAIASLRM
Whole chain analysis

  Help Knotoid data interpretation Full screen
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 20-248 229 1-19 300-301 249-299 19 2 slipknot
view details
2.1 43-238 196 239-301 1-4 5-42 4 62 slipknot
view details
2.1 51-242 192 243-301 1-42 43-50 42 58 slipknot
view details
2.1 52-258 207 1-50, 299-301 51-51, 259-298 50 3 slipknot
sequence length 301
structure length 297
publication title Mechanism of extracellular ion exchange and binding-site occlusion in a sodium/calcium exchanger.
pubmed doi rcsb
molecule tags Membrane protein
molecule keywords Uncharacterized membrane protein MJ0091
source organism Methanocaldococcus jannaschii (strain atcc 43067 / dsm 2661 / jal-1 / jcm 10045 / nbrc 100440)
missing residues 152-155
total genus Genus: 123
ec nomenclature
pdb deposition date 2016-04-16
KnotProt deposition date 2018-10-17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.58.1130 Mainly Alpha Up-down Bundle Methane Monooxygenase Hydroxylase; Chain G, domain 1 Methane Monooxygenase Hydroxylase; Chain G, domain 1 5jdhA01
1.20.1420.30 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 5jdhA02
5JDHA 5HYAA 5JDQA
chains in the KnotProt database with same CATH superfamily
5JDHA 5HYAA 5JDQA
chains in the KnotProt database with same CATH topology
5JDHA 5HYAA 5JDQA
chains in the KnotProt database with same CATH homology

  
#chains in the KnotProt database with same CATH superfamily
 5JDH A;  5HYA A;  5JDQ A; 
#chains in the KnotProt database with same CATH topology
 5JDH A;  5HYA A;  5JDQ A; 
#chains in the KnotProt database with same CATH homology
 5JDH A;  5HYA A;  5JDQ A;
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling