5JPQe

Cryo-em structure of the 90s pre-ribosome
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 153-197 45 1-152, 198-225 152 28 knot
Chain Sequence
PPVLTSKDKITKRMIVVLAMASLETHKI---------YVLLNCDDHQGLLDISEARPDI-----THQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 138-185 48 1-137, 186-211 137 26 knot
view details
2.1 62-182 121 1-19, 186-211 20-61, 183-185 19 26 slipknot
missing residues 29-37, 51-55
publication title Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
pubmed doi rcsb
structure length 211
molecule tags Ribosome
sequence length 225
total genus Genus: 42
molecule keywords WD40 domain proteins
ec nomenclature
pdb deposition date 2016-05-04
KnotProt deposition date 2016-07-29
Image from the rcsb pdb (www.rcsb.org)
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