5KZKA

Crystal structure of rrna methyltransferase from sinorhizobium meliloti
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 196-237 42 1-195, 238-269 195 32 knot
Chain Sequence
GQVKEVTSLTNPIVKDIRALTQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVY-------PQVEQVAAKTVARGGLVLEVNEKVISTITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIARANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLLSL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 188-231 44 1-187, 232-262 187 31 knot
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2.1 187-227 41 1-186 234-262 228-233 186 29 slipknot
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3.1 190-241 52 1-187, 259-262 188-189, 242-258 187 4 slipknot
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3.1 190-258 69 259-262 1-187 188-189 187 3 slipknot
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2.1 191-243 53 1-189, 259-262 190-190, 244-258 189 4 slipknot
missing residues 56-62
publication title Crystal Structure of rRNA methyltransferase from Sinorhizobium meliloti
rcsb
structure length 262
molecule tags Rna binding protein
source organism Rhizobium meliloti (strain 1021)
sequence length 269
total genus Genus: 77
molecule keywords Probable RNA methyltransferase, TrmH family
ec nomenclature
pdb deposition date 2016-07-25
KnotProt deposition date 2017-08-28
Image from the rcsb pdb (www.rcsb.org)
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