5L0ZA

Crystal structure of adomet bound rrna methyltransferase from sinorhizobium meliloti
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 196-237 42 1-195, 238-269 195 32 knot
Chain Sequence
GQVKEVTSLTNPIVKDIRALTQKKHRDETRSFMAEGLKLVIDALDLGWKIKTLVY-------PQVEQVAAKTVARGGLVLEVNEKVISTITRRDNPQMVVGIFEQRYSPLRDIHPQEGETYVALDRVRDPGNLGTIIRTADAAGASGIILVGETTDPFSLETVRATMGSVFAIPIARANTEDFIRWQRAAGVQVVATHLAGSVDYRTIDYKSKPVVLLMGNEQAGLPVELAREAGALARIPQAGRADSLNLAIATGIMLFEARRHLLSL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 188-231 44 1-187, 232-262 187 31 knot
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2.1 35-228 194 1-34 234-262 229-233 34 29 slipknot
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2.1 186-227 42 1-35, 232-262 36-185, 228-231 35 31 slipknot
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3.1 190-236 47 1-187, 249-262 188-189, 237-248 187 14 slipknot
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3.1 190-248 59 1-187, 251-262 188-189, 249-250 187 12 slipknot
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2.1 191-251 61 252-262 1-187 188-190 187 10 slipknot
missing residues 56-62
publication title Crystal Structure of AdoMet bound rRNA methyltransferase from Sinorhizobium meliloti
rcsb
structure length 262
molecule tags Transferase
source organism Rhizobium meliloti (strain 1021)
sequence length 269
total genus Genus: 76
molecule keywords Probable RNA methyltransferase, TrmH family
ec nomenclature
pdb deposition date 2016-07-28
KnotProt deposition date 2017-08-28
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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