5L25A

Crystal structure of arabidopsis thaliana bor1
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 51 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 115
Knot K 01

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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31 68-244 177 1-67, 245-554 67 310 knot
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51 19-252 234 1-18 272-554 253-271 18 283 slipknot
Chain Sequence
GFRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTAICGMIHS-------LILGVAEPTVIMYTFMFNFAKARPELGRDLFLAWSGWVCVWTALMLFVLAICGACSIINRFTRVAGELFGLLIAMLFMQQAIKGLVDEFRIPERENQKLKEFLPSWRFANGMFALVLSFGLLLTGLRSRKARSWRYGTGWLRSLIADYGVPLMVLVWTGVSYIPIVYIIGA------------------------------------FIPASMIAVLYYFDHSVASQLAQQKEFDLLLLGFLTLMCGLLGSNGVIPQSPMHTKSLATVSNLLQSTMV----------GGCVAAMPILKTSVLWGYFAFMAIES---LPGNQFWERILLLFTAPSRR----------------------------------------------------------------------------------------------FKVLYHATFVETVPFKTIAMFTLFQTTYLLICFGLTWIPIAGVMFPLMIMFLIPVRQYLLP
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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5.1m 16-215 200 1-15 226-399 216-225 15 174 slipknot
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4.3 19-223 205 1-18 239-399 224-238 18 161 slipknot
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3.1m 19-263 245 1-18 363-399 264-362 18 37 slipknot
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2.1m 19-363 345 1-10, 370-399 11-18, 364-369 10 30 slipknot
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3.1m 29-307 279 1-14, 373-399 15-28, 308-372 14 27 slipknot
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2.1m 30-388 359 389-399 1-15 16-29 15 10 slipknot
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2.1m 30-308 279 1-28, 372-399 29-29, 309-371 28 28 slipknot
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2.1m 29-241 213 1-17, 251-399 18-28, 242-250 17 149 slipknot
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3.14m 29-234 206 1-18, 242-399 19-28, 235-241 18 158 slipknot
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2.1m 29-271 243 1-18, 299-399 19-28, 272-298 18 101 slipknot
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3.14m 26-267 242 1-19, 272-399 20-25, 268-271 19 128 slipknot
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2.1m 31-225 195 1-20, 234-399 21-30, 226-233 20 166 slipknot
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2.1m 27-258 232 1-20, 267-399 21-26, 259-266 20 133 slipknot
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2.1m 27-266 240 1-20, 269-399 21-26, 267-268 20 131 slipknot
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4.3 28-217 190 1-21, 224-399 22-27, 218-223 21 176 slipknot
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2.1m 30-298 269 1-21, 306-399 22-29, 299-305 21 94 slipknot
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3.14m 30-235 206 1-28, 243-399 29-29, 236-242 28 157 slipknot
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1.1m 52-220 169 1-32, 237-399 33-51, 221-236 32 163 slipknot
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2.1m 56-220 165 1-51, 237-399 52-55, 221-236 51 163 slipknot
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1.1m 69-221 153 1-55, 236-399 56-68, 222-235 55 164 slipknot
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1.1m 69-235 167 1-55, 240-399 56-68, 236-239 55 160 slipknot
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2.1m 67-215 149 1-55, 222-399 56-66, 216-221 55 178 slipknot
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2.1m 69-215 147 1-66, 222-399 67-68, 216-221 66 178 slipknot
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1.1m 70-224 155 1-68, 236-399 69-69, 225-235 68 164 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling