5L9UA

Model of human anaphase-promoting complex/cyclosome (apc/c-cdh1) with a cross linked ubiquitin variant-substrate-ube2c (ubch10) complex representing key features of multiubiquitination
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 714-779 66 1-713, 780-1907 713 1128 knot
Chain Sequence
MIAARDLQEFVPFGRDHCKHHP---------------------------------------ESWQLRKGVSEIGEDVDYDEELYVAGNMVIWSKAVYKAFTVDSPVQQALWCDFIIEVEKCICILQSSCINMH-------SIEGKDYIASLPFQVANVWPTKYGLLFER------------SPLPTMFSMLHPLDEITPLVCKVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVWTLR-------------RVKSVPELCIDHLWTNSQASKVFITSDLCGQKFL---------CFLVESQLQLRCVKFQESTQLIFGSVTNIPAKDAAPVEKIDTMLVLEGSG-------------------------------------------------------------------------------------------------------------------------------NLVLYTGVVRVGKVFIPGTYIHSIRDPVHNRVTLELSNGSMVRITIPEIATSELVQTCLQAIKFILPKEIAVQMLVKWYNVHSAYHSEWNLFVTCLMNMMGYDDDWEYLLNSDYHQNVESHLTHIPAIFFVLHLVYEE---------LKLNTLMGEGICSLVELLVQLARDLKLGPYVDHYYRDYPTLSEPPS---IYQWVSSCLKGEGMPPYPYLPGICERSRLVVLSIALYILSSLAERLVVWMTN--------------------------------------------------------------------VGFTLRDLETLPFGIALPIRDAIYHCREQPASDWPEAVCLLIGRQDLSKQDDGMNDMNHEVMSLIWSEDLRVQDVRRLLQSAHPVRVNVVQYPELSDHEFIEEKENRLLQLCQRTMALPVGRGMFTLFSYHPVPT-----EPLPIPKLNLTGRAPPRNTTVDL---------------------------------NSGNIDVPPNMTSWASFHNGVAAGLKIAPASQIDSAWIVYNKPKHAELANEYA---------------------------------GFLMALGLNGHLTKLATLNIHDYLTKGHEMTSIGLLLGVSAAKLGTMDMSITRLLSIHIPALLPPTSTELDVPHNVQVAAVVGIGLVYQG-------------------------TAHRHTAEVLLAEIGRPPGPEMEYCTDRESYSLAAGLALGMVCLGHGSNLIGMSDLNVPEQLYQYMVGGHSPSYQIKEGDTINVDVTCPGATLALAMIYLKTNNRSIADWLRAPDTMYLLDFVKPEFLLLRTLARCLILWDDILPNSKWVDSNVPQIIRENLNLETLSQAHVYIIAGACLSLGFRFAGSENLSAFNCLHKFAKDFMTYLSAPNASVTGPHNLETCLSVVLLSLAMVMAGSGNLKVLQLCRFLHMKTGGEMNYGFHLAHHMALGLLFLGGGRYSLSTSNSSIAALLCALYPHFPAHSTDNRYHLQALRHLYVLAAEPRLLVPVDVDTNTPCYALLEVTYKGTQWYEQTKEELMAPTLLPELHLLKQIKVKGPRYWELLIDLTQHLKSILSKDGVLYVKLRASFAEYFCKFSSVLYECVTQETPEMLPAYIAMDQAIRRLGRREMSETSELWQIKLVLEFFSSRSHQFMNSEFLPVVKCTIDNTLDQWLQVGGDMCVHAYLSLEESQLSMLACFLVYHSVPSTSFAELLFK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 714-779 66 1-713 781-1907 780-780 713 1127 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling