5LBRA

Wild-type pas-gaf fragment from deinococcus radiodurans bphp collected at sacla
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 84
Knot K 41 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-267 239 1-28, 268-316 28 49 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP---HLSLTVHRVGELLILEFEPTELRN---------AMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQYLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 26-295 270 1-25, 296-304 25 9 knot
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3.2m 27-251 225 1-26 261-304 252-260 26 44 slipknot
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3.2m 28-263 236 1-27 296-304 264-295 27 9 slipknot
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4.1 24-260 237 1-12, 264-304 13-23, 261-263 12 41 slipknot
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3.2 30-292 263 293-304 1-25 26-29 25 11 slipknot
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3.2 31-294 264 295-304 1-29 30-30 29 9 slipknot
sequence length 316
structure length 304
publication title The room temperature crystal structure of a bacterial phytochrome determined by serial femtosecond crystallography.
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans
missing residues 101-103, 125-133
total genus Genus: 84
ec nomenclature
pdb deposition date 2016-06-17
KnotProt deposition date 2016-11-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling