5LRMA

Structure of di-zinc mcr-1 in p41212 space group
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 126
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 25-247 223 1-24 276-323 248-275 24 48 slipknot
Chain Sequence
TIYHAKDAVQATKPDMRKPRLVVFVVGETARADHVSFNGYERDTFPQLAKIDGVTNFSNVTSCGTSTAYSVPCMFSYLGADEYDVDTAKYQENVLDTLDRLGVSILWRDNNSDSKGVMDKLPKAQFADYKSATNNAICNTNPYNECRDVGMLVGLDDFVAANNGKDMLIMLHQMGNHGPAYFKRYDEKFAKFTPV-----------QSLINAYDNALLATDDFIAQSIQWLQTHSNAYDVSMLYVSDHGESLGENGVYLHGMPNAFAPKEQRSVPAFFWTDKQTGITPMATDTVLTHDAITPTLLKLFDVTADKVKDRTAFIR
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 24-235 212 1-23 261-312 236-260 23 52 slipknot
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3.1 22-260 239 1-21 263-312 261-262 21 50 slipknot
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2.1 10-262 253 1-9 266-312 263-265 9 47 slipknot
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3.1 15-262 248 1-9, 266-312 10-14, 263-265 9 47 slipknot
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2.1 20-262 243 1-14, 266-312 15-19, 263-265 14 47 slipknot
sequence length 323
structure length 312
publication title Structure of the catalytic domain of MCR-1
rcsb
molecule tags Transferase
molecule keywords phosphatidylethanolamine transferase Mcr-1
source organism Escherichia coli
missing residues 196-206
total genus Genus: 126
ec nomenclature
pdb deposition date 2016-08-19
KnotProt deposition date 2016-12-15
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling