5MQNA

Glycoside hydrolase bt_0986
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 349
Knot K -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
-31 854-901 48 1-853, 902-1073 853 172 knot
Chain Sequence
LLREQFQNPSDEAKPWTFWYWMFGAVSKEGITADLEAMKRAGLGGTYLMPIKGIKEGPQYNGKAQQLTPEWWEMVRFSMEEADRLGLKLGMHICDGFALAGGPWMTPKESMQKIVWSDTIVDGGKIKGLHLPQPEAYEGFYEDISLFALPVKEEAADVMPAQITCANIATGNHIDIKKTVNMDDAGVIRSSYPCYIQYEYEQPFTCRNIEIILSGNNYQAHRLKVMASDDGVNYRLVKQLVPARQGWQNTDENSTHAIPATTARYFRFYWTPEGSEPGSEDMDAAKWKPNLKIKELRLHREARLDQWEGKAGLVWRVASSTKKEEIGEQDCYALSQIINLTDPF-----------TLTATLPKGKWKLLRMGHTATGHTNATAGGGKGLECDKFNPKAVRKQFDNWFAQAFVKTNPDVARRVLKYMHVDSWECGSQNWSDTFAAEFRKRRGYDLMPYLPLLAGIPMESAERSEKILRDVRTTIGELVVDVFYQVLADCAKEYDCQFSAECVAPTMVSDGLLHYQKVDLPMGEFWLNSPTHDKPNDMLDAISGAHIYGKNIIQAEGFTEVRGTWNEHPGILKALLDRNYALGINRLFFHVYVHNPWLDRKPGMTLDGIGLFFQRDQTWWNKGAKAFCEYITRCQSLLQYGHPVADIAVFTGEEMPRRSILPERLVPSLPGIFGAERVESERIRLANEGQPLRVRPVGVTHSANMSDPEKWVNPLRGYAYDSFNKDALLRLAKAENGRMTLPGGASYKVLVLPLPRPMNPDPAALSPEVKQKINELKEAGILIPSLPYKEDDFSSYGLERDLIVPENIAWTHRQGEQGDIYFIANQLEETRTFTASMRIDGRKPECWNPVTGEINADIPYEQKSHRTEITLTLAPNESVFIVYPATGLEATEYTVT------------------------FTANGKTIQRQELFDWSKEEDEQIRYYSGTAVYKTTFRWKSKVKEDQQVYLNLGKVCDLATVRVNGIDCGTIWTAPYRADITAALKKGVNELEIEVTNTWANALKGADEGKAPFDGIWTNAKYRRAENTLLPAGLLGPLNFDVAN
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 1x -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
- 31 721-768 48 1-720, 769-940 720 172 knot
Fingerprint Knot forming loop Loop type
K -31
Chain closureLeu30 <-> Asn1102
... Glu593 <->
Bridging ionCa1201
<-> Asp458 ... Leu30		 probabilistic
Chain Sequence
LLREQFQNPSDEAKPWTFWYWMFGAVSKEGITADLEAMKRAGLGGTYLMPIKGIKEGPQYNGKAQQLTPEWWEMVRFSMEEADRLGLKLGMHICDGFALAGGPWMTPKESMQKIVWSDTIVDGGKIKGLHLPQPEAYEGFYEDISLFALPVKEEAADVMPAQITCANIATGNHIDIKKTVNMDDAGVIRSSYPCYIQYEYEQPFTCRNIEIILSGNNYQAHRLKVMASDDGVNYRLVKQLVPARQGWQNTDENSTHAIPATTARYFRFYWTPEGSEPGSEDMDAAKWKPNLKIKELRLHREARLDQWEGKAGLVWRVASSTKKEEIGEQDCYALSQIINLTDPF-----------TLTATLPKGKWKLLRMGHTATGHTNATAGGGKGLECDKFNPKAVRKQFDNWFAQAFVKTNPDVARRVLKYMHVDSWECGSQNWSDTFAAEFRKRRGYDLMPYLPLLAGIPMESAERSEKILRDVRTTIGELVVDVFYQVLADCAKEYDCQFSAECVAPTMVSDGLLHYQKVDLPMGEFWLNSPTHDKPNDMLDAISGAHIYGKNIIQAEGFTEVRGTWNEHPGILKALLDRNYALGINRLFFHVYVHNPWLDRKPGMTLDGIGLFFQRDQTWWNKGAKAFCEYITRCQSLLQYGHPVADIAVFTGEEMPRRSILPERLVPSLPGIFGAERVESERIRLANEGQPLRVRPVGVTHSANMSDPEKWVNPLRGYAYDSFNKDALLRLAKAENGRMTLPGGASYKVLVLPLPRPMNPDPAALSPEVKQKINELKEAGILIPSLPYKEDDFSSYGLERDLIVPENIAWTHRQGEQGDIYFIANQLEETRTFTASMRIDGRKPECWNPVTGEINADIPYEQKSHRTEITLTLAPNESVFIVYPATGLEATEYTVT------------------------FTANGKTIQRQELFDWSKEEDEQIRYYSGTAVYKTTFRWKSKVKEDQQVYLNLGKVCDLATVRVNGIDCGTIWTAPYRADITAALKKGVNELEIEVTNTWANALKGADEGKAPFDGIWTNAKYRRAENTLLPAGLLGPLNFDVAN
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


  Help Knotoid subchains data interpretation Full screen
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 853-917 65 1-852, 918-1073 852 156 knot
view details
2.1m 855-918 64 919-1073 1-852 853-854 852 154 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling