5NFXA

Deinococcus radiodurans bphp pas-gaf y263f mutant
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 28-268 241 1-27, 269-316 27 48 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPA--HLSLTVHRVGELLILEFEPTELR---------NAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 25-295 271 1-24, 296-305 24 10 knot
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3.2m 27-253 227 1-26 263-305 254-262 26 43 slipknot
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4.1 26-263 238 1-25 275-305 264-274 25 31 slipknot
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3.2m 26-277 252 1-25 296-305 278-295 25 10 slipknot
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4.1 21-262 242 1-5, 264-305 6-20, 263-263 5 42 slipknot
view details
4.1 25-262 238 1-20, 264-305 21-24, 263-263 20 42 slipknot
missing residues 102-103, 125-133
publication title On the (un)coupling of the chromophore, tongue interactions and overall conformation in a bacterial phytochrome.
pubmed doi rcsb
structure length 305
molecule tags Transferase
source organism Deinococcus radiodurans r1
sequence length 316
total genus Genus: 84
molecule keywords Bacteriophytochrome
ec nomenclature
pdb deposition date 2017-03-16
KnotProt deposition date 2018-04-18
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling