5NM3A

Deinococcus radiodurans bphp pas-gaf-phy y263f mutant, pre-illuminated
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 142
Knot K 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-269 241 1-28, 270-499 28 230 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWPA-GHLSLTVHRVGELLILEFEPTET----GPHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVAWGGATPDKDDLG--PRHSFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGALEHH
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 28-303 276 1-27, 304-492 27 189 knot
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3.2m 26-259 234 1-25 269-492 260-268 25 224 slipknot
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3.2m 16-268 253 1-15 272-492 269-271 15 221 slipknot
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3.2m 27-274 248 1-26 300-492 275-299 26 193 slipknot
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4.1 21-268 248 1-15, 272-492 16-20, 269-271 15 221 slipknot
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4.1 30-299 270 300-492 1-22 23-29 22 192 slipknot
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3.2 31-303 273 304-492 1-29 30-30 29 188 slipknot
sequence length 499
structure length 492
publication title On the (un)coupling of the chromophore, tongue interactions and overall conformation in a bacterial phytochrome.
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
missing residues 102, 125-128, 452-453
total genus Genus: 142
ec nomenclature
pdb deposition date 2017-04-05
KnotProt deposition date 2018-04-18
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling