5NW4b

Human cytoplasmic dynein-1 bound to dynactin and an n-terminal construct of bicd2
Slipknot S -82 -52 -31 -31 -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 605-281 -323 1-604, 282-818 604 536 slipknot
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51 133-425 293 1-132 773-818 426-772 132 46 slipknot
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82 139-664 526 1-46, 783-818 47-138, 665-782 46 36 slipknot
Chain Sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1m 43-271 229 1-42 338-602 272-337 42 265 slipknot
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3.1m 42-341 300 1-41 375-602 342-374 41 228 slipknot
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5.1m 42-374 333 1-41 411-602 375-410 41 192 slipknot
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5.1m 45-516 472 1-44 573-602 517-572 44 30 slipknot
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2.1m 68-267 200 1-35, 338-602 36-67, 268-337 35 265 slipknot
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4.3 57-378 322 1-37, 413-602 38-56, 379-412 37 190 slipknot
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1.1m 65-243 179 1-38, 268-602 39-64, 244-267 38 335 slipknot
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1.1m 69-242 174 1-41, 268-602 42-68, 243-267 41 335 slipknot
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2.1m 70-274 205 1-67, 337-602 68-69, 275-336 67 266 slipknot
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2.1m 70-337 268 1-39, 339-602 40-69, 338-338 39 264 slipknot
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3.14m 71-338 268 1-39, 364-602 40-70, 339-363 39 239 slipknot
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3.14m 71-363 293 1-41, 378-602 42-70, 364-377 41 225 slipknot
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3.14m 71-377 307 1-41, 380-602 42-70, 378-379 41 223 slipknot
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4.3 73-377 305 1-56, 410-602 57-72, 378-409 56 193 slipknot
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4.3 73-409 337 1-56, 413-602 57-72, 410-412 56 190 slipknot
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4.3 73-412 340 1-39, 416-602 40-72, 413-415 39 187 slipknot
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3.14m 72-341 270 1-70, 378-602 71-71, 342-377 70 225 slipknot
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2.1m 103-345 243 1-71, 381-602 72-102, 346-380 71 222 slipknot
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2.1m 103-380 278 1-72, 391-602 73-102, 381-390 72 212 slipknot
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3.1m 102-390 289 1-72, 411-602 73-101, 391-410 72 192 slipknot
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3.1m 102-410 309 1-72, 416-602 73-101, 411-415 72 187 slipknot
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3.1m 102-415 314 1-69, 417-602 70-101, 416-416 69 186 slipknot
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3.1m 102-416 315 1-72, 418-602 73-101, 417-417 72 185 slipknot
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3.1m 102-417 316 1-68, 419-602 69-101, 418-418 68 184 slipknot
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3.1m 102-418 317 1-70, 421-602 71-101, 419-420 70 182 slipknot
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3.1m 102-420 319 1-68, 424-602 69-101, 421-423 68 179 slipknot
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3.1m 102-423 322 1-77, 425-602 78-101, 424-424 77 178 slipknot
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2.1m 107-338 232 1-71, 370-602 72-106, 339-369 71 233 slipknot
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2.1m 107-369 263 1-102, 381-602 103-106, 370-380 102 222 slipknot
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3.1m 103-390 288 1-101, 411-602 102-102, 391-410 101 192 slipknot
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3.1m 103-410 308 1-101, 416-602 102-102, 411-415 101 187 slipknot
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3.1m 103-418 316 1-101, 421-602 102-102, 419-420 101 182 slipknot
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8.20m 100-516 417 1-73, 554-602 74-99, 517-553 73 49 slipknot
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3.1m 106-381 276 1-102, 416-602 103-105, 382-415 102 187 slipknot
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3.1m 106-415 310 1-102, 417-602 103-105, 416-416 102 186 slipknot
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3.1m 106-416 311 1-102, 418-602 103-105, 417-417 102 185 slipknot
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3.1m 106-417 312 1-102, 419-602 103-105, 418-418 102 184 slipknot
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3.1m 106-418 313 1-102, 421-602 103-105, 419-420 102 182 slipknot
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5.1m 100-459 360 1-79, 486-602 80-99, 460-485 79 117 slipknot
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2.1m 107-382 276 1-105, 417-602 106-106, 383-416 105 186 slipknot
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3.1m 107-418 312 1-105, 421-602 106-106, 419-420 105 182 slipknot
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4.3 146-442 297 1-101, 493-602 102-145, 443-492 101 110 slipknot
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3.14m 139-420 282 1-102, 443-602 103-138, 421-442 102 160 slipknot
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4.3 148-442 295 1-145, 493-602 146-147, 443-492 145 110 slipknot
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2.1m 145-381 237 1-105, 400-602 106-144, 382-399 105 203 slipknot
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2.1m 148-383 236 1-106, 415-602 107-147, 384-414 106 188 slipknot
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2.1m 148-414 267 1-106, 420-602 107-147, 415-419 106 183 slipknot
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2.1m 148-419 272 1-106, 427-602 107-147, 420-426 106 176 slipknot
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2.1m 148-426 279 1-138, 428-602 139-147, 427-427 138 175 slipknot
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2.1m 148-427 280 1-138, 431-602 139-147, 428-430 138 172 slipknot
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1.1m 142-369 228 1-105, 382-602 106-141, 370-381 105 221 slipknot
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2.1m 156-384 229 1-147, 415-602 148-155, 385-414 147 188 slipknot
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3.14m 145-430 286 1-138, 443-602 139-144, 431-442 138 160 slipknot
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1.1m 149-343 195 1-107, 377-602 108-148, 344-376 107 226 slipknot
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3.14m 152-420 269 1-144, 450-602 145-151, 421-449 144 153 slipknot
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3.14m 152-449 298 1-147, 455-602 148-151, 450-454 147 148 slipknot
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3.14m 152-454 303 1-147, 458-602 148-151, 455-457 147 145 slipknot
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3.14m 152-457 306 1-147, 459-602 148-151, 458-458 147 144 slipknot
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3.14m 152-458 307 1-147, 462-602 148-151, 459-461 147 141 slipknot
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3.14m 152-461 310 1-147, 463-602 148-151, 462-462 147 140 slipknot
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3.1m 168-516 349 1-145, 585-602 146-167, 517-584 145 18 slipknot
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3.1m 168-461 294 1-147, 502-602 148-167, 462-501 147 101 slipknot
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3.1m 168-501 334 1-147, 508-602 148-167, 502-507 147 95 slipknot
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3.1m 169-461 293 1-167, 502-602 168-168, 462-501 167 101 slipknot
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2.1m 223-417 195 1-150, 455-602 151-222, 418-454 150 148 slipknot
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2.1m 223-454 232 1-151, 458-602 152-222, 455-457 151 145 slipknot
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2.1m 223-457 235 1-151, 461-602 152-222, 458-460 151 142 slipknot
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2.1m 223-460 238 1-151, 463-602 152-222, 461-462 151 140 slipknot
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2.1m 223-462 240 1-168, 467-602 169-222, 463-466 168 136 slipknot
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2.1m 226-424 199 1-222, 463-602 223-225, 425-462 222 140 slipknot
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2.1m 226-462 237 1-222, 467-602 223-225, 463-466 222 136 slipknot
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2.1m 228-483 256 1-157, 519-602 158-227, 484-518 157 84 slipknot
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2.1m 236-424 189 1-225, 463-602 226-235, 425-462 225 140 slipknot
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2.1m 236-462 227 1-225, 467-602 226-235, 463-466 225 136 slipknot
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3.1m 197-466 270 1-172, 484-602 173-196, 467-483 172 119 slipknot
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3.1m 218-518 301 1-172, 559-602 173-217, 519-558 172 44 slipknot
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3.1m 220-518 299 1-217, 559-602 218-219, 519-558 217 44 slipknot
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3.1m 221-466 246 1-196, 484-602 197-220, 467-483 196 119 slipknot
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3.1m 221-518 298 1-219, 559-602 220-220, 519-558 219 44 slipknot
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2.1m 205-574 370 1-176, 587-602 177-204, 575-586 176 16 slipknot
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3.1m 222-466 245 1-220, 484-602 221-221, 467-483 220 119 slipknot
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3.1m 222-518 297 1-220, 559-602 221-221, 519-558 220 44 slipknot
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3.1m 199-562 364 1-182, 575-602 183-198, 563-574 182 28 slipknot
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3.1m 226-466 241 1-221, 484-602 222-225, 467-483 221 119 slipknot
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3.1m 211-560 350 1-190, 577-602 191-210, 561-576 190 26 slipknot
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3.1m 211-576 366 1-204, 578-602 205-210, 577-577 204 25 slipknot
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3.1m 215-560 346 1-210, 577-602 211-214, 561-576 210 26 slipknot
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3.1m 230-571 342 1-205, 591-602 206-229, 572-590 205 12 slipknot
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2.1m 253-516 264 1-229, 561-602 230-252, 517-560 229 42 slipknot
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1.1m 251-423 173 1-232, 455-602 233-250, 424-454 232 148 slipknot
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1.1m 255-426 172 1-250, 455-602 251-254, 427-454 250 148 slipknot
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2.1m 251-561 311 1-233, 579-602 234-250, 562-578 233 24 slipknot
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1.1m 251-504 254 1-235, 517-602 236-250, 505-516 235 86 slipknot
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2.1m 257-501 245 1-237, 514-602 238-256, 502-513 237 89 slipknot
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1.1m 257-513 257 1-250, 517-602 251-256, 514-516 250 86 slipknot
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2.1m 253-587 335 1-237, 600-602 238-252, 588-599 237 3 slipknot
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1.1m 256-433 178 1-254, 449-602 255-255, 434-448 254 154 slipknot

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling