5NWNA

Deinococcus radiodurans bphp pas-gaf-phy y263f mutant, dark
Warning
  • Chain breaks within knot 41 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 134
Knot K 41 41

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 29-269 241 1-28, 270-496 28 227 knot
Chain Sequence
PFFPPLYLGGPEITTENCEREPIHIPGSIQPHGALLTADGHSGEVLQMSLNAATFLGQEPTVLRGQTLAALLPEQWPALQAALPPGCPDALQYRATLDWP--GHLSLTVHRVGELLILEFEPTETG----PHALRNAMFALESAPNLRALAEVATQTVRELTGFDRVMLYKFAPDATGEVIAEARREGLHAFLGHRFPASDIPAQARALYTRHLLRLTADTRAAAVPLDPVLNPQTNAPTPLGGAVLRATSPMHMQFLRNMGVGSSLSVSVVVGGQLWGLIACHHQTPYVLPPDLRTTLEYLGRLLSLQVQVKEAADVAAFRQSLREHHARVALAAAHSLSPHDTLSDPALDLLGLMRAGGLILRFEGRWQTLGEVPPAPAVDALLAWLETQPGALVQTDALGQLWPAGADLAPSAAGLLAISVGEGWSECLVWLRPELRLEVDLGPRH------------SFDTYLEEKRGYAEPWHPGEIEEAQDLRDTLTGAL
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 27-301 275 1-26, 302-478 26 177 knot
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3.2m 25-258 234 1-24 268-478 259-267 24 211 slipknot
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3.2m 27-271 245 1-26 294-478 272-293 26 185 slipknot
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3.2m 7-299 293 1-6 305-478 300-304 6 174 slipknot
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4.1 25-267 243 1-12, 271-478 13-24, 268-270 12 208 slipknot
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3.2m 30-300 271 1-23, 398-478 24-29, 301-397 23 81 slipknot
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3.2 30-397 368 1-26, 441-478 27-29, 398-440 26 38 slipknot
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3.2 31-302 272 1-29, 437-478 30-30, 303-436 29 42 slipknot
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3.2 31-440 410 441-478 1-26 27-30 26 37 slipknot
sequence length 496
structure length 478
publication title On the (un)coupling of the chromophore, tongue interactions and overall conformation in a bacterial phytochrome.
pubmed doi rcsb
molecule tags Transferase
molecule keywords Bacteriophytochrome
source organism Deinococcus radiodurans (strain atcc 13939 / dsm 20539 / jcm 16871 / lmg 4051 /
missing residues 101-102, 125-128, 444-455
total genus Genus: 134
ec nomenclature
pdb deposition date 2017-05-07
KnotProt deposition date 2018-04-18
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling