5OOMs

Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rrna
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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-31 193-255 63 1-192, 256-390 192 135 knot
Chain Sequence
VARYPPIVASMTADSKAARLRRIERWQATVHAAESVDEKLRILTKMQFMKYMVYPQTFALNADRWYQYFTKTVFLSGLP--------------------AALRAVACDCLLQEHFYLRRRRRVHRYEESEVISLPFLDQLVSTLVGLLSPHNPALAAAALDYRCPVHFYWVRGEEIIPRGHRRGRIDDLRYQIDDKPNNQIRISKQLAEFVPLDYSVPIEIPTIKCKPDKLPLFKRQYENHIFVGSKTADPCCYGHTQFHLLPDKLRRERLLRQNCADQIEVVFRANAIASLFAWTGAQAMYQGFWSEADVTRPFVSQAVITDGKYFSFFCYQLNTLALTTQADQNNPRKNICWGTQSKPLYETIEDNDVKGFNDDVLLQIVHFLLNRPK
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1m 52-358 307 1-51, 359-370 51 12 knot
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3.1m 167-238 72 1-150, 263-370 151-166, 239-262 150 108 slipknot
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3.1m 169-238 70 1-166, 263-370 167-168, 239-262 166 108 slipknot
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3.1m 169-262 94 1-151, 265-370 152-168, 263-264 151 106 slipknot
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2.1m 169-264 96 1-151, 280-370 152-168, 265-279 151 91 slipknot
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3.1m 170-334 165 335-370 1-151 152-169 151 35 slipknot
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2.1m 171-263 93 1-168, 277-370 169-170, 264-276 168 94 slipknot
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3.1m 169-297 129 1-152, 311-370 153-168, 298-310 152 60 slipknot
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3.1m 171-334 164 335-370 1-169 170-170 169 35 slipknot
missing residues 80-99
publication title Structures of the human mitochondrial ribosome in native states of assembly
doi rcsb
structure length 370
molecule tags Ribosome
sequence length 390
total genus Genus: 20
molecule keywords 16S ribosomal RNA
ec nomenclature
pdb deposition date 2017-08-08
KnotProt deposition date 2017-09-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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