5TDLA

Crystal structure of prefusion-stabilized bovine rsv fusion glycoprotein (single-chain ds2-v1 variant: strain 391-2 sc9 ds-cav1 q98c q361c)
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 29-265 237 1-28 273-487 266-272 28 215 slipknot
Chain Sequence
QNITEEFYQSTCSAVSRGYLSALRTGWYTSVVTIELSKIQKNVCKSTDSKVKLIKQELERYNNAVIELQSLMCNEPASFSGSGSAIASGVAVCKVLHLEGEVNKIKNALLSTNKAVVSLSNGVSVLTFKVLDLKNYIDKELLPKLNNHDCRISNIETVIEFQQKNNRLLEIAREFSVNAGITTPLSTYMLTNSELLSLINDMPITNDQKKLMSSNVQIVRQQSYSIMCVVKEEVIAYVVQLPIYGVIDTPCWKLHTSPLCTTDNKEGSNICLTRTDRGWYCDNAGSVSFFPQAETCKVCSNRVFCDTMNSLTLPTDVNLCNTDIFNTKYDCKIMTSKTDISSSVITSIGAIVSCYGKTKCTASNKNRGIIKTFSNGCDYVSNKGVDTVSVGNTLYYVNKLEGKALYIKGEPIINYYDPLVFPSDEFDASIAQVNAKINQSLAFIRRSDEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 32-225 194 1-31 238-450 226-237 31 213 slipknot
sequence length 450
structure length 450
publication title Protection of calves by a prefusion-stabilized bovine RSV F vaccine.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords Bovine prefusion RSV F glycoprotein
source organism Bovine respiratory syncytial virus (strain copenhagen)
total genus Genus: 99
ec nomenclature
pdb deposition date 2016-09-19
KnotProt deposition date 2018-09-14
Image from the rcsb pdb (www.rcsb.org)
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