5VHIE

Conformational landscape of the p28-bound human proteasome regulatory particle
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 62
Knot K +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 105-218 114 1-104, 219-373 104 155 knot
Chain Sequence
DYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPRE----------------------------------------------------PKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDGESARLIREMFNYARDHQPCIIFMDEIDAIGGSADREIQRTLMELLNQMDGF---DTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHID-------LPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESK
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 105-203 99 1-104, 204-311 104 108 knot
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3.1 105-163 59 1-104 202-311 164-201 104 110 slipknot
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2.1 46-201 156 1-45 208-311 202-207 45 104 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling