5VHSE

Conformational landscape of the p28-bound human proteasome regulatory particle
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
  • Chain breaks within knot 51 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 5
Knot K 31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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31 105-219 115 1-104 265-373 220-264 104 109 slipknot
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51 105-265 161 1-104, 266-373 104 108 knot
Chain Sequence
DYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPRE-----------------------------------------------------KGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKI-------HIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKKLESK
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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5.1 105-204 100 1-104, 205-313 104 109 knot
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3.1 105-166 62 1-104 203-313 167-202 104 111 slipknot
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2.1 18-164 147 1-5, 167-313 6-17, 165-166 5 147 slipknot
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2.1 34-165 132 1-27, 167-313 28-33, 166-166 27 147 slipknot
How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling