5VPUA

Crystal structure of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase bound to 3-phosphoglycerate, from acinetobacter baumannii
Genus: 204
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 6-444 439 1-5 463-509 445-462 5 47 slipknot
Chain Sequence
AGKIPHVLVIMDGVGHREAIEDNAFLAAKTPNLTAMKAKHPNSLISGSGEDVGLPDGQMGNSEVGHMNLGAGRVLYQDFTRITKDIRTGAFFEHEVLVDAVEKAKAAGGAVHIMGLLSEGGVHSHEDHIVAMCELALKRGAKVYLHAFLDGRDTPPRSAQPSLEKLDALFAQYEGKGRIATMIGRYFAMDRDNRWDRVEQAYRLLTEGEAVRTATTAVEGLELAYAANENDEFVKATRIGEIAKVQDGDSVVFMNFRADRAREITRAFVEKDFAGFERKVVPNLSKFVMLTRYQASIDAPVAYMPEELKNSLGEYLSSLGKTQLRIAETEKYAHVTFFFSGGREDEYPGEKRILIPSPNVATYDLKPEMSAYEVTDELVKAINSGEYDLLVVNYANGDMVGHTGVFDAAVKAVEAVDTCLGRVYEAVMAKKGHMLITADHGNVEQMQDYESGQVHTQHTTELVPFIYVGPTQATIAEGGVLADVAPTILNLMQIPVPAEMQGRNLITLS
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 4x -31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
- 31 14-109 96 1-13, 110-155 13 46 knot
Fingerprint Knot forming loop Loop type
K -31
Chain closureAla6 <-> Ser514
... His463 <->
Bridging ionMn601
<-> His407 ... His445 <->
Bridging ionMn602
<-> Ser67 ... Ala6		 probabilistic
K -31
Chain closureAla6 <-> Ser514
... His463 <->
Bridging ionMn601
<-> Asp403 ... His445 <->
Bridging ionMn602
<-> Ser67 ... Ala6		 probabilistic
K -31
Chain closureAla6 <-> Ser514
... His463 <->
Bridging ionMn601
<-> His407 ... Asp444 <->
Bridging ionMn602
<-> Ser67 ... Ala6		 probabilistic
K -31
Chain closureAla6 <-> Ser514
... His463 <->
Bridging ionMn601
<-> Asp403 ... Asp444 <->
Bridging ionMn602
<-> Ser67 ... Ala6		 probabilistic
Chain Sequence
AGKIPHVLVIMDGVGHREAIEDNAFLAAKTPNLTAMKAKHPNSLISGSGEDVGLPDGQMGNSEVGHMNLGAGRVLYQDFTRITKDIRTGAFFEHEVLVDAVEKAKAAGGAVHIMGLLSEGGVHSHEDHIVAMCELALKRGAKVYLHAFLDGRDTPPRSAQPSLEKLDALFAQYEGKGRIATMIGRYFAMDRDNRWDRVEQAYRLLTEGEAVRTATTAVEGLELAYAANENDEFVKATRIGEIAKVQDGDSVVFMNFRADRAREITRAFVEKDFAGFERKVVPNLSKFVMLTRYQASIDAPVAYMPEELKNSLGEYLSSLGKTQLRIAETEKYAHVTFFFSGGREDEYPGEKRILIPSPNVATYDLKPEMSAYEVTDELVKAINSGEYDLLVVNYANGDMVGHTGVFDAAVKAVEAVDTCLGRVYEAVMAKKGHMLITADHGNVEQMQDYESGQVHTQHTTELVPFIYVGPTQATIAEGGVLADVAPTILNLMQIPVPAEMQGRNLITLS
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 6-443 438 1-5 463-509 444-462 5 47 slipknot
view details
3.1 5-462 458 1-4 464-509 463-463 4 46 slipknot
view details
2.1 5-463 459 1-4 465-509 464-464 4 45 slipknot
sequence length 509
structure length 509
publication title Crystal Structure of 2,3-bisphosphoglycerate-independent phosphoglycerate mutase bound to 3-phosphoglycerate, from Acinetobacter baumannii
rcsb
molecule tags Isomerase
molecule keywords 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
source organism Acinetobacter baumannii
total genus Genus: 204
ec nomenclature
pdb deposition date 2017-05-05
KnotProt deposition date 2018-10-18
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling