5WTUA

Crystal structure of dnde g21/24k mutant involved in dna phosphorothioation
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Knot K -31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
-31 8-98 91 1-7, 99-105 7 7 knot
Chain Sequence
MLPNRMALSRQTEDQLKKLKKY-KITPNIAARLAFFRSVESEFRYSPERDSKKLDGTLVLDKITWLGETLQATELVLKMLYPQLEQKALIKAWAAHVEDGIAALR
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1m 6-100 95 1-5, 101-104 5 4 knot
view details
2.1m 7-92 86 1-6 101-104 93-100 6 4 slipknot
missing residues 23
publication title Crystal structure of DndE G21/24K mutant involved in DNA phosphorothioation
rcsb
structure length 104
molecule tags Dna binding protein
source organism Escherichia coli
sequence length 105
total genus Genus: 34
molecule keywords DNA sulfur modification protein DndE
ec nomenclature
pdb deposition date 2016-12-14
KnotProt deposition date 2018-02-21
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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