5WYKE1

Cryo-em structure of the 90s small subunit pre-ribosome (mtr4-depleted, enp1-tap)
Knot K +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 152-197 46 1-151, 198-225 151 28 knot
Chain Sequence
PPVLTSKDKITKRMIVVLAMASLETHKI--------KYVLLNCDDHQGLLKKMGRDISEARPDITHQCLLTLLDSPINKAGKLQVYIQTSRGILIEVNPTVRIPRTFKRFSGLMVQLLHKLSIRSVNSEEKLLKVIKNPITDHLPTKCRKVTLSFDAPVIRVQDYIEKLDDDESICVFVGAMARGKDNFADEYVDEKVGLSNYPLSASVACSKFCHGAEDAWNIL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 141-205 65 1-140, 206-217 140 12 knot
view details
3.1 141-190 50 1-140 196-217 191-195 140 22 slipknot
view details
3.1 141-195 55 1-140 206-217 196-205 140 12 slipknot
view details
3.1 142-195 54 1-140, 206-217 141-141, 196-205 140 12 slipknot
view details
3.1 142-205 64 206-217 1-140 141-141 140 11 slipknot
missing residues 29-36
publication title Molecular architecture of the 90S small subunit pre-ribosome.
pubmed doi rcsb
structure length 217
molecule tags Ribosome
sequence length 225
total genus Genus: 56
molecule keywords U3 RNA
ec nomenclature
pdb deposition date 2017-01-13
KnotProt deposition date 2017-04-07
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling