5X9RA

Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 156
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 194-389 196 1-193 399-425 390-398 193 27 slipknot
Chain Sequence
FKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVR---------EKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMM
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 61-374 314 1-60 395-416 375-394 60 22 slipknot
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2.1 66-380 315 1-62, 385-416 63-65, 381-384 62 32 slipknot
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2.1 71-378 308 1-63, 391-416 64-70, 379-390 63 26 slipknot
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2.1 104-374 271 1-65, 395-416 66-103, 375-394 65 22 slipknot
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2.1 100-361 262 1-95, 366-416 96-99, 362-365 95 51 slipknot
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2.1 103-359 257 1-99, 364-416 100-102, 360-363 99 53 slipknot
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2.3 112-387 276 1-106, 393-416 107-111, 388-392 106 24 slipknot
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2.1 125-377 253 1-113, 391-416 114-124, 378-390 113 26 slipknot
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2.1 132-384 253 1-128, 390-416 129-131, 385-389 128 27 slipknot
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2.1 167-375 209 1-133, 394-416 134-166, 376-393 133 23 slipknot
sequence length 425
structure length 416
publication title Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Citrate-sodium symporter
source organism Klebsiella pneumoniae
missing residues 229-237
total genus Genus: 156
ec nomenclature
pdb deposition date 2017-03-08
KnotProt deposition date 2017-06-23
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the KnotProt database (?% sequence similarity)
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#similar chains, but unknotted
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling