5XARA

Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 186-375 190 1-185 411-429 376-410 185 19 slipknot
Chain Sequence
LLGFKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRKA------------ITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMMI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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2.1 64-371 308 1-63 417-429 372-416 63 13 slipknot
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2.1 109-370 262 1-66, 417-429 67-108, 371-416 66 13 slipknot
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1.1 128-396 269 1-114, 411-429 115-127, 397-410 114 19 slipknot
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2.1 160-372 213 1-134, 413-429 135-159, 373-412 134 17 slipknot
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2.1 159-412 254 1-140, 414-429 141-158, 413-413 140 16 slipknot
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1.1 179-371 193 1-155, 415-429 156-178, 372-414 155 15 slipknot
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2.1 191-372 182 1-178, 396-429 179-190, 373-395 178 34 slipknot
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2.1 191-395 205 1-178, 413-429 179-190, 396-412 178 17 slipknot
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2.1 191-412 222 1-179, 414-429 180-190, 413-413 179 16 slipknot
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2.1 192-372 181 1-190, 396-429 191-191, 373-395 190 34 slipknot
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2.1 192-396 205 1-190, 413-429 191-191, 397-412 190 17 slipknot
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1.1 204-372 169 1-188, 416-429 189-203, 373-415 188 14 slipknot
missing residues 234-245
publication title Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
pubmed doi rcsb
structure length 417
molecule tags Transport protein
source organism Klebsiella pneumoniae
sequence length 429
total genus Genus: 162
molecule keywords Citrate-sodium symporter
ec nomenclature
pdb deposition date 2017-03-14
KnotProt deposition date 2018-09-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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