5XASA

Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 191-387 197 1-190 398-425 388-397 190 28 slipknot
Chain Sequence
KIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELV----------------THRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMMI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 62-367 306 1-61 387-409 368-386 61 23 slipknot
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2.1 103-367 265 1-62, 387-409 63-102, 368-386 62 23 slipknot
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2.1 107-372 266 1-102, 377-409 103-106, 373-376 102 33 slipknot
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2.1 107-378 272 1-103, 383-409 104-106, 379-382 103 27 slipknot
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2.1 162-370 209 1-157, 379-409 158-161, 371-378 157 31 slipknot
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2.1 192-369 178 1-162, 385-409 163-191, 370-384 162 25 slipknot
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1.1 203-368 166 1-191, 385-409 192-202, 369-384 191 25 slipknot
missing residues 227-242
publication title Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
pubmed doi rcsb
structure length 409
molecule tags Transport protein
source organism Klebsiella pneumoniae
sequence length 425
total genus Genus: 157
molecule keywords Citrate-sodium symporter
ec nomenclature
pdb deposition date 2017-03-14
KnotProt deposition date 2017-06-23
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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