5XATA

Structural insights into the elevator-like mechanism of the sodium/citrate symporter cits
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Slipknot S +31 +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 144-392 249 1-143 398-426 393-397 143 29 slipknot
Chain Sequence
GFKIFGMPLPLYAFALITLLLSHFYNALPTDIVGGFAIMFIIGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQKEIDAISNVMDKSNFLNLFIAVLITGAILSVNRRLLLKSLLGYIPTILMGIVGASIFGIAIGLVFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTIANIFAIVFAAVLDIIGKKHTWLSGEGELVRK--------EKTGQITHRETAVGLVLSTTCFLLAYVVAKKILPSIGGVAIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSKQLLWVLMVGVGVCYTDLQEIINAITFANVVIAAIIVIGAVLGAAIGGWLMGFFPIESAITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFGMM
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 63-384 322 1-62 405-426 385-404 62 22 slipknot
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2.1 108-383 276 1-65, 405-426 66-107, 384-404 65 22 slipknot
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2.1 132-387 256 1-113, 401-426 114-131, 388-400 113 26 slipknot
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2.1 163-384 222 1-128, 404-426 129-162, 385-403 128 23 slipknot
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2.1 195-386 192 1-162, 403-426 163-194, 387-402 162 24 slipknot
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1.1 206-385 180 1-194, 402-426 195-205, 386-401 194 25 slipknot
view details
1.1 204-401 198 1-194, 403-426 195-203, 402-402 194 24 slipknot
missing residues 231-238
publication title Structural insights into the elevator-like mechanism of the sodium/citrate symporter CitS
pubmed doi rcsb
structure length 418
molecule tags Transport protein
source organism Klebsiella pneumoniae
sequence length 426
total genus Genus: 157
molecule keywords Citrate-sodium symporter
ec nomenclature
pdb deposition date 2017-03-14
KnotProt deposition date 2018-09-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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