5XLSA

Crystal structure of uraa in occluded conformation
Slipknot S +31 +31 +31 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 87-238 152 239-408 1-28 29-86 28 169 slipknot
Chain Sequence
AIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTIIISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGMALATIVGIGLSLIFKLISVL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 45-332 288 333-408 1-21 22-44 21 75 slipknot
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2.1 43-240 198 1-24, 260-408 25-42, 241-259 24 149 slipknot
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2.1 43-259 217 1-24, 263-408 25-42, 260-262 24 146 slipknot
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2.1 43-287 245 1-25, 313-408 26-42, 288-312 25 96 slipknot
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2.3 41-263 223 1-27, 278-408 28-40, 264-277 27 131 slipknot
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1.1 81-229 149 1-65, 243-408 66-80, 230-242 65 166 slipknot
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3.1 92-327 236 328-408 1-65 66-91 65 80 slipknot
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2.1 80-284 205 1-66, 313-408 67-79, 285-312 66 96 slipknot
sequence length 408
structure length 408
publication title Dimeric structure of the uracil:proton symporter UraA provides mechanistic insights into the SLC4/23/26 transporters
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Uracil permease
source organism Escherichia coli o157:h7
total genus Genus: 146
ec nomenclature
pdb deposition date 2017-05-11
KnotProt deposition date 2018-09-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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