6BAFA

Structure of the chromophore binding domain of stigmatella aurantiaca phytochrome p1, wild-type
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
41 13-260 248 1-12, 261-303 12 43 knot
Chain Sequence
TNCDREPIHIPGAIQPHGVLLVLSEPGLVLTHASENAPAVLGNSAEQLLGAPLGHFIEPSVREPLEADLRSARLKQLNPLKVVWRVDGVDRFFDGIAHRHQGRLILELEPSSHREAVPFLSFFHAVRDGLSRLRDARDLQELCEAVVQEVRGLTGFDRAIIYRFDAEWNGSVIAEARDARADPYLGLHFPASDIPRQARELYQLNWLRIIPTIDYQPARVRALPGHGEPLDLSFSVLRSVSPIHLEYLHNMGVQASMSISLMKDGKLWGLISCTQVSGTRYVPYEVRTACEFLGEVMSSLLAA
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
4.1 12-299 288 1-11, 300-303 11 4 knot
view details
3.2m 12-256 245 1-11 268-303 257-267 11 36 slipknot
view details
3.2m 13-279 267 1-12 300-303 280-299 12 4 slipknot
view details
3.2 15-296 282 297-303 1-11 12-14 11 6 slipknot
publication title Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome
doi rcsb
structure length 303
molecule tags Signaling protein
source organism Stigmatella aurantiaca dw4/3-1
sequence length 303
total genus Genus: 91
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2017-10-12
KnotProt deposition date 2018-09-25
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling