6BAPA

Stigmatella aurantiaca bacterial phytochrome pas-gaf-phy, t289h mutant
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 19-263 245 1-18, 264-505 18 242 knot
Chain Sequence
QEVDLTNCDREPIHIPGAIQPHGVLLVLSEPGLVLTHASENAPAVLGNSAEQLLGAPLGHFIEPSVREPLEADLRSARLKQLNPLKVVWRVDGVDRFFDGIAHRHQGRLILELEPSSHREAVPFLSFFHAVRDGLSRLRDARDLQELCEAVVQEVRGLTGFDRAIIYRFDAEWNGSVIAEARDARADPYLGLHFPASDIPRQARELYQLNWLRIIPTIDYQPARVRALPGHGEPLDLSFSVLRSVSPIHLEYLHNMGVQASMSISLMKDGKLWGLISCHQVSGTRYVPYEVRTACEFLGEVMSSLLAAKEGNEDYDQRIRAKSIHAALLERMAREVDFVSGLASQESGLLELVHAHGAAIHFHGRTTVLGQAPSDEALTGLIEWLGSRTGEGVFCTDRLAREYPEAQAFQEVAAGLMAFSMSRGRNNFVLWFRPEAVQTVNWSGNPTKAVEFDQGGPRLHPRKSFELWKETVRGRCLPWKAYEVEAASELRRSIIDVALQRSEEL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 17-303 287 1-16, 304-505 16 202 knot
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3.2m 17-259 243 1-16 268-505 260-267 16 238 slipknot
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4.1 13-267 255 1-12 274-505 268-273 12 232 slipknot
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3.2m 17-268 252 1-16 279-505 269-278 16 227 slipknot
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3.2m 15-278 264 1-14 282-505 279-281 14 224 slipknot
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3.2m 17-283 267 1-16 304-505 284-303 16 202 slipknot
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3.2 21-300 280 301-505 1-16 17-20 16 204 slipknot
publication title Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome
doi rcsb
structure length 505
molecule tags Signaling protein
source organism Stigmatella aurantiaca dw4/3-1
sequence length 505
total genus Genus: 139
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2017-10-14
KnotProt deposition date 2018-09-25
Image from the rcsb pdb (www.rcsb.org)
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