6BMIA

Crystal structure of gltph r397c in complex with l-serine
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 53-313 261 1-52 375-408 314-374 52 34 slipknot
Chain Sequence
EYPVLQKILIGLILGAIVGLILGHYGYADAVKTYVKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAGIHLAVGGQQFQPKQAPPLVKILLDIVPTNPFGALANGQVLPTIFFAIILGIAITYLMNSENEKVRKSAETLLDAINGLAEAMYKIVNGVMQYAPIGVFALIAYVMAEQGVKVVGELAKVTAAVYVGLTLQILLVYFVLLKIYGIDPISFIKKAKDAMLTAFVTRSSSGTLPVTMRVAKEMGISEGIYSFTLPLGATINMDGTALYQGVCTFFIANALGSHLTVGQQLTIVLTAVLA------------IMLAMVLESVGLPLTDPNVAAAYAMILGIDAILDMGCTMVNVTGDLTGTAIVAKTE
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 42-298 257 1-41 322-396 299-321 41 75 slipknot
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3.1 12-321 310 1-11 334-396 322-333 11 63 slipknot
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3.1 43-343 301 1-42 362-396 344-361 42 35 slipknot
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3.1 39-321 283 1-12, 337-396 13-38, 322-336 12 60 slipknot
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2.1 60-315 256 1-43, 338-396 44-59, 316-337 43 59 slipknot
view details
2.1 57-337 281 1-49, 347-396 50-56, 338-346 49 50 slipknot
sequence length 408
structure length 396
publication title Structural characterisation reveals insights into substrate recognition by the glutamine transporter ASCT2/SLC1A5.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Glutamate transporter homolog
source organism Pyrococcus horikoshii
missing residues 341-352
total genus Genus: 142
ec nomenclature
pdb deposition date 2017-11-14
KnotProt deposition date 2018-01-17
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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