6DZM | KnotProt

Genus: 35

Slipknot S +3₁

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	68-139	72		1-1, 143-260	2-67, 140-142	1	118	slipknot

Chain Sequence

IPLGVVHNNTLQVSDIDKLVCRDKLSSTSQLKSVGLNLEGNGVATDVPTATKRWGFRAGVPPKVVNYEAGEWAENCYNLDIKKADGSECLPEAPEGVRGFPRCRYVHKVSGTGPCPEGYAFHKEGAFFLYDRLASTIIYRSTTFSEGVVAFLILPETKKDF---------------------TVTLNYVADNFGTNMTNFLFQVDHLTYVQLEPRFTPQFLVQLNETIYTNGRLIWKVNPWAFWE

Whole chain analysis

Help Knotoid data interpretation Full screen

Subchain analysis

Knotoid cutoff: 0.5

Knotoid matrix content: 1

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Jmol getValue AUDIOCallback null

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Help Knotoid subchains data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				2.1	76-137	62	1-75	145-260	138-144	75	116	slipknot
view details				1.1	80-138	59		1-75, 144-260	76-79, 139-143	75	117	slipknot

sequence length	260
structure length	224
publication title	Structural basis of pan-ebolavirus neutralization by an antibody targeting the glycoprotein fusion loop rcsb
molecule tags	Viral protein
molecule keywords	Bundibugyo virus GP1
source organism	Bundibugyo ebolavirus
missing residues	162-182, 234-240, 248-255
total genus	Genus: 35
ec nomenclature
pdb deposition date	2018-07-05
KnotProt deposition date	2018-09-15

Image from the rcsb pdb (www.rcsb.org)

6F6NA
similar chains in the KnotProt database (40% sequence similarity)

5JQ3A 5JQ7A 5JQBA 6EAYB 6F6IA 7KEWA 7KFEA 7TN9S
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
6F6N A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
5JQ3 A; 5JQ7 A; 5JQB A; 6EAY B; 6F6I A; 7KEW A; 7KFE A; 7TN9 S;

6DZMA

Slipknot S +31

Chain Sequence

Slipknot S +3₁