6F2GA

Bacterial asc transporter crystal structure in open to in conformation
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 33-211 179 212-430 1-16 17-32 16 218 slipknot
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41 9-251 243 1-8 279-430 252-278 8 152 slipknot
Chain Sequence
VSGITALTVVVGTVIGAGIFFKPTAVYGAAGAPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIFATQFVNLFALSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPFSDWFARINPKTNLPINGGLVMLGIAIVMILTGQFNQLTDLIVFVIWFFITLTFIAVIILRKTQPDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQPKNAFIGILLTLIGIPIYFYCKKKYGS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 9-258 250 1-8 275-430 259-274 8 156 slipknot
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2.1 40-284 245 1-13, 347-430 14-39, 285-346 13 84 slipknot
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2.1 40-348 309 349-430 1-13 14-39 13 81 slipknot
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3.1 38-204 167 1-15, 229-430 16-37, 205-228 15 202 slipknot
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1.1 31-194 164 1-20, 205-430 21-30, 195-204 20 226 slipknot
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1.1 39-228 190 1-20, 243-430 21-38, 229-242 20 188 slipknot
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2.1 37-242 206 1-22, 244-430 23-36, 243-243 22 187 slipknot
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1.1 35-194 160 1-30, 205-430 31-34, 195-204 30 226 slipknot
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1.1 41-225 185 1-38, 243-430 39-40, 226-242 38 188 slipknot
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1.1 36-200 165 1-34, 205-430 35-35, 201-204 34 226 slipknot
publication title L amino acid transporter structure and molecular bases for the asymmetry of substrate interaction.
pubmed doi rcsb
structure length 430
molecule tags Transport protein
source organism Carnobacterium sp. at7
sequence length 430
total genus Genus: 155
molecule keywords Putative amino acid/polyamine transport protein
ec nomenclature
pdb deposition date 2017-11-24
KnotProt deposition date 2019-05-07
Image from the rcsb pdb (www.rcsb.org)
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