6F2GA

Bacterial asc transporter crystal structure in open to in conformation
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 33-211 179 212-430 1-16 17-32 16 218 slipknot
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41 9-251 243 1-8 279-430 252-278 8 152 slipknot
Chain Sequence
VSGITALTVVVGTVIGAGIFFKPTAVYGAAGAPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIFATQFVNLFALSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPFSDWFARINPKTNLPINGGLVMLGIAIVMILTGQFNQLTDLIVFVIWFFITLTFIAVIILRKTQPDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQPKNAFIGILLTLIGIPIYFYCKKKYGS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 9-258 250 1-8 275-430 259-274 8 156 slipknot
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2.1 40-284 245 1-13, 347-430 14-39, 285-346 13 84 slipknot
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2.1 40-348 309 349-430 1-13 14-39 13 81 slipknot
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3.1 38-204 167 1-15, 229-430 16-37, 205-228 15 202 slipknot
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1.1 31-194 164 1-20, 205-430 21-30, 195-204 20 226 slipknot
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1.1 39-228 190 1-20, 243-430 21-38, 229-242 20 188 slipknot
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2.1 37-242 206 1-22, 244-430 23-36, 243-243 22 187 slipknot
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1.1 35-194 160 1-30, 205-430 31-34, 195-204 30 226 slipknot
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1.1 41-225 185 1-38, 243-430 39-40, 226-242 38 188 slipknot
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1.1 36-200 165 1-34, 205-430 35-35, 201-204 34 226 slipknot
sequence length 430
structure length 430
publication title L amino acid transporter structure and molecular bases for the asymmetry of substrate interaction.
pubmed doi rcsb
molecule tags Transport protein
molecule keywords Putative amino acid/polyamine transport protein
source organism Carnobacterium sp. at7
total genus Genus: 155
ec nomenclature
pdb deposition date 2017-11-24
KnotProt deposition date 2019-05-07
Image from the rcsb pdb (www.rcsb.org)
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