6F2WA

Bacterial asc transporter crystal structure in open to in conformation
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 36-209 174 210-433 1-19 20-35 19 223 slipknot
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41 11-250 240 1-10 285-433 251-284 10 149 slipknot
Chain Sequence
MKEVSGITALTVVVGTVIGAGIFFKPTAVYGAAGAPGLGLLAWFVAGIITIAGGLTVAEIGTIYPQTGGMMIYLEKVYGRWLGFLVGWAQMVIYYPANIAALAIIFATQFVNLFALSDSTIVPTAILTSIFLMGVNFLGTKYSGWIQTLATILKLIPLVVIIVAGLLYPGGGVIRLVPFSVETHPVLTSFGSALIATLFAYDGWINVGTLAGEMKNPGKMLPKVIIGGLSIVMAVYLLTNIAYLFVLDSSQLAGTDTPAALVASHLFEGIGSKLVTIGILISVFGGINGYIISGLRVPYALATQKMLPFSDWFARINPKTNLPINGGLVMLGIAIVMILTGQFNQLTDLIVFVIWFFITLTFIAVIILRKTQPDIERPYRVPFYPVIPLIAIIGGLYIIFNTLIVQPKNAFIGILLTLIGIPIYFYCKKKYGS
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.2 22-260 239 1-2, 281-433 3-21, 261-280 2 153 slipknot
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3.2 21-280 260 1-2, 283-433 3-20, 281-282 2 151 slipknot
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2.1 44-284 241 1-16, 343-433 17-43, 285-342 16 91 slipknot
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2.1 37-201 165 1-19, 233-433 20-36, 202-232 19 201 slipknot
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1.1 41-227 187 1-22, 246-433 23-40, 228-245 22 188 slipknot
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1.1 41-245 205 1-28, 247-433 29-40, 246-246 28 187 slipknot
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1.1 43-227 185 1-40, 246-433 41-42, 228-245 40 188 slipknot
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2.1 44-230 187 1-42, 246-433 43-43, 231-245 42 188 slipknot
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1.1 44-245 202 1-40, 247-433 41-43, 246-246 40 187 slipknot
publication title L amino acid transporter structure and molecular bases for the asymmetry of substrate interaction.
pubmed doi rcsb
structure length 433
molecule tags Transport protein
source organism Carnobacterium sp. at7
sequence length 433
total genus Genus: 154
molecule keywords Putative amino acid/polyamine transport protein
ec nomenclature
pdb deposition date 2017-11-27
KnotProt deposition date 2019-05-07
Image from the rcsb pdb (www.rcsb.org)
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