6F6SA

Crystal structure of ebolavirus glycoprotein in complex with benztropine
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 77-141 65 1-76 146-326 142-145 76 181 slipknot
Chain Sequence
RSIPLGVIHNSALQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQ----------------------SGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTWAFWETELSFTVVXXXXXX
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 79-139 61 1-78 148-250 140-147 78 103 slipknot
view details
1.1 84-140 57 1-78, 146-250 79-83, 141-145 78 105 slipknot
sequence length 326
structure length 250
publication title Target identification and mode of action of four chemically divergent drugs against Ebola virus infection.
pubmed doi rcsb
molecule tags Viral protein
molecule keywords Envelope glycoprotein,Envelope glycoprotein,GP1
source organism Zaire ebolavirus (strain mayinga-76)
missing residues 159-180, 254-257, 264-274, 282-320
total genus Genus: 57
ec nomenclature
pdb deposition date 2017-12-06
KnotProt deposition date 2018-01-03
Image from the rcsb pdb (www.rcsb.org)
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