6G9IA

Crystal structure of ebolavirus glycoprotein in complex with clomipramine
Slipknot S +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 74-140 67 1-73 144-446 141-143 73 303 slipknot
Chain Sequence
SIPLGVIHNSALQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQA---------------------SGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTEWAFWETLSFTVVXXXXXXX
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 77-138 62 1-76 146-287 139-145 76 142 slipknot
view details
1.1 81-139 59 1-76, 145-287 77-80, 140-144 76 143 slipknot
missing residues 159-179, 253-255, 263-274
publication title Structures of Ebola Virus Glycoprotein Complexes with Tricyclic Antidepressant and Antipsychotic Drugs.
pubmed doi rcsb
structure length 251
molecule tags Viral protein
source organism Ebola virus - mayinga, zaire, 1976
sequence length 287
total genus Genus: 59
molecule keywords Envelope glycoprotein,Envelope glycoprotein
ec nomenclature
pdb deposition date 2018-04-10
KnotProt deposition date 2018-09-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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