6HWZA

Selenols: a new class of carbonic anhydrase inhibitors
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 22-253 232 1-21, 254-256 21 3 knot
Chain Sequence
WGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRASF
Note, that the numbers in the matrix denote the consecutive residues in the loop, not the index of amino acids in the chain!
Knot K 3x +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
+ 31 22-253 232 1-21, 254-256 21 3 knot
Fingerprint Knot forming loop Loop type
K +31
Chain closureTrp6 <-> Phe261
... His97 <->
Bridging ionZn301
<-> His95 ... Trp6
probabilistic
K +31 Trp6 ... His97 <->
Bridging ionZn301
<-> His120 ...
Chain closurePhe261 <-> Trp6
probabilistic
K +31
Chain closureTrp6 <-> Phe261
... His120 <->
Bridging ionZn301
<-> His95 ... Trp6
probabilistic
Chain Sequence
WGYDDKNGPEQWSKLYPIANGNNQSPVDIKTSETKHDTSLKPISVSYNPATAKEIINVGHSFHVNFEDNDNRSVLKGGPFSDSYRLFQFHFHWGSTNEHGSEHTVDGVKYSAELHVAHWNSAKYSSLAEAASKADGLAVIGVLMKVGEANPKLQKVLDALQAIKTKGKRAPFTNFDPSTLLPSSLDFWTYPGSLTHPPLYESVTWIICKESISVSSEQLAQFRSLLSNVEGDNAVPMQHNNRPTQPLKGRTVRASF
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
2.1 21-251 231 1-20, 252-256 20 5 knot
view details
3.1 23-254 232 255-256 1-20 21-22 20 1 slipknot
sequence length 256
structure length 256
publication title Selenols: a new class of carbonic anhydrase inhibitors.
pubmed doi rcsb
molecule tags Lyase
molecule keywords Carbonic anhydrase 1
source organism Homo sapiens
total genus Genus: 70
ec nomenclature
pdb deposition date 2018-10-15
KnotProt deposition date 2019-01-09
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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