6J66A

Chondroitin sulfate/dermatan sulfate endolytic 4-o-sulfatase
Warning
  • Chain breaks within knot 31 (displayed as a gray area on the plot and as '-' on the sequence). The broken part of the chain has been replaced by a straight segment, which may affect what knot types are detected - be careful with interpreting results.
Genus: 171
Slipknot S +31

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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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+31 6-300 295 1-5 320-475 301-319 5 156 slipknot
Chain Sequence
KKPNLLIVFPDEMRAHTLGFMNQDRSYTPNLNKFAKESAVLKQAVSNFPL-TPFRGMLMTGQYPYRNGIQGNSHTAMPGNFGGKDFGIELKKSTRTWSDILKDQGYSMGYIGKWHLDTPEAPFIPSYNNPMEGRYWNDWTAPDRRHGFDFWYAYGTYDKHLTPIYWTNETPRDQPIKVNQWSPEHEADIAIKYLRNENGHYRDRDKPFTLVVSMNPPHSPYDQVPQKYLDKFDGETSRSLNTRPNVQWDQEYLEGYGPEYFKEYMAMVHGVDDQFGRIIDELDRLGLTEDTLVVFFSDHGCCMGSNGKPTKNVHYEEAMRIPMMFRWPGKLTPRQDDLLFSAPDIYPTLFGLMGLEELIPDTVEGTNFAKTVSGIEGDTRPTSQLYTFMPYGGQSYGRRGVRTDRYTLMIDRKIAKPLTFVLHDNQNDPYQMTNIANDNQELIAQLIEKELIPWLELTGDPWRPTEVPASVAKAY
Whole chain analysis

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Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1


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Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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3.1 4-307 304 1-3 320-475 308-319 3 156 slipknot
sequence length 475
structure length 474
publication title Comparative Study of Two Chondroitin Sulfate/Dermatan Sulfate 4-O-Sulfatases With High Identity.
pubmed doi rcsb
molecule tags Hydrolase
molecule keywords Chondroitin sulfate/dermatan sulfate 4-O-endosulfatase protein
source organism Vibrio sp. fc509
missing residues 51
total genus Genus: 171
ec nomenclature
pdb deposition date 2019-01-14
KnotProt deposition date 2019-07-13
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
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How to cite
KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling