6JKI | KnotProt

Genus: 74

Knot K +3₁

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Jmol JavaScript applet jmolApplet0__339181651430379__ initializing

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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The Resolver thinks Pdb

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Time for openFile(/static/knot_data/6jki/A/6jki_A.pdb.gz): 1060 ms

reading 241 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

241 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 34 ms

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Help Knotting data interpretation Full screen

					Knot core range	Knot core length	Knot tails range	Slipknot tails range	Slipknot loops range	N-end length	C-end length	Type
view details				+3₁	89-133	45	1-88, 134-248			88	115	knot

Chain Sequence

SMLWVGVVSIFPEMFRAISDYGITSRAVKQGLLTLTCWNPRVYTEDRHQTVDDRPFGGGPGMVMKIKPLEGALADARQAAGGRKAKVIYLSPQGRQLTQAGVRELAEEEALILIAGRYEGIDERFIEEHVDEEWSIGDYVLSGGELPAMVLVDAVTRLLPGAL-------EDSFTDGLLDCPHYTRPEVYADKRVPEVLLSGNHEHIRRWRLQQALGRTWERRADLLDSRSLSGEEQKLLAEYIRQRD

sequence length	248
structure length	241
publication title	Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD fromPseudomonas aeruginosa. pubmed doi rcsb
molecule tags	Transferase
molecule keywords	tRNA (guanine-N(1)-)-methyltransferase
source organism	Pseudomonas aeruginosa
missing residues	164-170
total genus	Genus: 74
ec nomenclature	ec 2.1.1.228: tRNA (guanine(37)-N(1))-methyltransferase.
pdb deposition date	2019-03-01
KnotProt deposition date	2021-06-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01746	tRNA_m1G_MT	tRNA (Guanine-1)-methyltransferase

Image from the rcsb pdb (www.rcsb.org)

1P9PA 1UAJA 1UAKA 5WYQA 5WYRA 6AFKA 6JOEA
similar chains in the KnotProt database (40% sequence similarity)

5ZHMA 5ZHNA
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)
1P9P A; 1UAJ A; 1UAK A; 5WYQ A; 5WYR A; 6AFK A; 6JOE A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)
5ZHM A; 5ZHN A;

6JKIA

Knot K +31

Chain Sequence

pfam database annotations

Knot K +3₁