6KKUA

Human kcc1 structure determined in nacl and gdn
Slipknot S 41 +31 +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 30-328 299 329-537 1-19 20-29 19 208 slipknot
view details
41 11-363 353 1-10 402-537 364-401 10 136 slipknot
Chain Sequence
PSMGTLMGVYLPCLQNIFGVILFLRLTWMVGTAGVLQALLIVLICCCCTLLTAISMSAIATNGVVPAGGSYFMISRSLGPEFGGAVGLCFYLGTTFAAAMYILGAIEILLTYIAPPAAIFYPSGAHDTSNATLNNMRVYGTIFLTFMTLVVFVGVKYVNKFASLFLACVIISILSIYAGGIKSIFDPPVFPVCMLGNRTLSRDQFDICAKTAVVDNETVATQLWSFFCHSPNLTTDSCDPYFMLNNVTEIPGIPGAAAGVLQENLWSAYLEKGDIVEKHGLPSADAPSLKESLPLYVVADIATSFTVLVGIFFPSVTGIMAGSNRSGDLRDAQKSIPVGTILAIITTSLVYFSSVVLFGACIEGVVLRDKYGDGVSRNLVVGTLAWPSPWVIVIGSFFSTCGAGLQSLTGAPRLLQAIAKDNIIPFLRVFGHGKVNGEPTWALLLTALIAELGILIASLDMVAPILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWALSFLGMSLCLALMFVSSWYYALVAMLIAGMIYKYI
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.2 6-357 352 1-5 365-537 358-364 5 173 slipknot
view details
3.2 9-376 368 1-8 386-537 377-385 8 152 slipknot
view details
3.2 10-387 378 1-9 404-537 388-403 9 134 slipknot
view details
2.1 34-408 375 1-15, 455-537 16-33, 409-454 15 83 slipknot
view details
2.1 35-316 282 1-16, 347-537 17-34, 317-346 16 191 slipknot
view details
2.1 34-346 313 1-17, 357-537 18-33, 347-356 17 181 slipknot
view details
2.1 35-477 443 478-537 1-16 17-34 16 59 slipknot
publication title Cryo-EM structures of the human cation-chloride cotransporter KCC1.
doi rcsb
structure length 537
molecule tags Transport protein
source organism Homo sapiens
sequence length 537
molecule keywords Solute carrier family 12 member 4
ec nomenclature
pdb deposition date 2019-07-27
KnotProt deposition date 2019-10-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00324 AA_permease Amino acid permease
Image from the rcsb pdb (www.rcsb.org)
...loading similar chains, please wait...
similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the KnotProt database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

KnotProt | Interdisciplinary Laboratory of Biological Systems Modelling