6P4G | KnotProt

Cysteine knot

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Jmol JavaScript applet jmolApplet3__572462183012035__ initializing

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AppletRegistry.checkIn(jmolApplet3__572462183012035__)

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setting document base to "https://knotprot.cent.uw.edu.pl/view/6p4g/e/"

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Jmol getValue APPLETREADYCallback Jmol._readyCallback

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callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

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Viewer cachePut cache://localLOAD_/static/knot_data/6p4g/e/6p4g_e_cysteine_knot.pdb.gz

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FileManager.getAtomSetCollectionFromFile(/static/knot_data/6p4g/e/6p4g_e_cysteine_knot.pdb.gz)

The Resolver thinks Pdb

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Time for openFile(/static/knot_data/6p4g/e/6p4g_e_cysteine_knot.pdb.gz): 712 ms

reading 55 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

55 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 21 ms

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Help Cysteine knot data interpretation Full screen

				Loop	Piercing
view details				21-c-24-b-39-c-24	24-b-42

Chain Sequence

GHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKLD

sequence length	55
structure length	55
publication title	The Israeli Acute Paralysis Virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs rcsb
molecule tags	Ribosome
molecule keywords	18S rRNA
source organism	Israeli acute paralysis virus
ec nomenclature
pdb deposition date	2019-05-27

Image from the rcsb pdb (www.rcsb.org)

None 4D61d 4UJEBd 4V5ZAn
similar chains in the KnotProt database (40% sequence similarity)

4KZXd 4KZYd 4KZZd 4UG0Sd 4UJCCd 4UJDCd
similar chains in the pdb database (40% sequence similarity)

#similar chains in the KnotProt database (40% sequence similarity)

#similar chains, but unknotted
4V5Z An; 
#similar chains in the pdb database (40% sequence similarity)
4KZX d; 4KZY d; 4KZZ d; 4UG0 Sd; 4UJC Cd; 4UJD Cd;

6P4Ge

Cysteine knot

Chain Sequence