6PRMA

Crystal structure of apo pss1_19b
Slipknot S +31
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
+31 5-267 263 1-4 293-447 268-292 4 155 slipknot
Chain Sequence
SKPNIVLIFADDAGFGDFGFQGSTQLKTPNLDKLAQSGVRFTQGYVSDSTCGPSRAGLMTGKYQQRFGYEEINVPGFMSGNSALKGADMGLPLDQKTMGDYLKEQGYKTAVFGKWHLGDADRFHPLKRGFDTFLGFRGGDRSYFNYSEQEMKNGNKHFFDKKLERDFGNYEEPKEYLTDVLGKEAAKYIEQNKDEPFFIYLAFNAVHTPLESDPKDLAKFPNLTGKRKELAAMTLGLDRASGYVLDKLKELGLDDNTIVVFSNDNGGPSDKNASNNAPLAGTKSNQLEGGIRVPFLISWPKHIKPGSTYDYPVSTLDLLPTFYSAAKGKALGSDIDGVDLLPYIQGENTARPHKVMYWKKENRAVIRDNDWKLIRYPDRPAELYDLSSDISEQTDLAAKNPERVKTMFKSLFEWELTLERPRWLLKRKYEKYDIDRMDKYRLPATQP
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
view details
3.1 7-282 276 1-6 294-447 283-293 6 154 slipknot
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2.1 7-293 287 1-6 295-447 294-294 6 153 slipknot
view details
2.1 9-282 274 1-6, 294-447 7-8, 283-293 6 154 slipknot
sequence length 447
structure length 447
publication title The Carrageenan Metabolism Pathway of Marine Pseudoalteromonas Species
rcsb
molecule tags Hydrolase
molecule keywords exo-4S-kappa carrageenan S1 sulfatase
source organism Pseudoalteromonas fuliginea
total genus Genus: 170
ec nomenclature
pdb deposition date 2019-07-10
KnotProt deposition date 2019-10-16
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the KnotProt database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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