6PTXA

Dark, 100k, pcm myxobacterial phytochrome, p2, wild type,
Knot K 41 41
Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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41 16-251 236 1-15, 252-481 15 230 knot
Chain Sequence
DLSQCDREPIHLLGGIQSHGVLLAFRGPDRLLEVVSANAQALLGRPPETLLGQPVGRVLPAEVLAQWEPLVARGSVRVVLPAGAYRALLHESDGLTVLELEPAELQPGMEETALEVVRRLVSPLAGVKGTQALLQTAADTVRALTGFDRVMVYRFDADWHGEVLAESKRGGMDGFLGMHFPATDIPVQARALYTRNPLRLIADARARPVPLLPPVVPALGRPLDLSNSALRSVSPVHLEYLRNMGVGASFSLSLLKEGVLWGLIACHHLEPLHISHERRRACEVLTQLLALQLSAEERAAEASEDAHRAALLGQLATAMGEGGTLEEVLEKESERVLALTGAAGVALLLGEEPLLVGCTPAQDEVEALVAWLATQPFQTSFHTDRLGTVYPPLAARADVAAGILAVRLAPAAARFAIWFRPEVARTISWAGNPRKPAEPEPGHQRLHPRGSFQAWEETVRDTSLPWKRADLGAAEGFRGAL
Whole chain analysis
Subchain analysis 

Knotoid cutoff: 0.5


Knotoid matrix content: 1

Knot core range Knot core length Knot tails range Slipknot tails range Slipknot loops range N-end length C-end length Type
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4.1 15-287 273 1-14, 288-481 14 194 knot
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3.2m 14-247 234 1-13 257-481 248-256 13 225 slipknot
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4.1 8-256 249 1-7 262-481 257-261 7 220 slipknot
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3.2m 14-257 244 1-13 269-481 258-268 13 213 slipknot
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3.2m 10-268 259 1-2, 270-481 3-9, 269-269 2 212 slipknot
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3.2m 13-271 259 1-12 294-481 272-293 12 188 slipknot
publication title High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures.
pubmed doi rcsb
structure length 481
molecule tags Signaling protein
source organism Stigmatella aurantiaca
sequence length 481
molecule keywords Photoreceptor-histidine kinase BphP
ec nomenclature
pdb deposition date 2019-07-16
KnotProt deposition date 2019-10-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01590 GAF GAF domain
Image from the rcsb pdb (www.rcsb.org)
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similar chains in the pdb database (?% sequence similarity)

 
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